Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

26309917 .. 26310261

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGGAGGGTCATCCGAGCTCAGCGTAAGGGTGCGGGTTCCGTGTTCAAGTCTCACACCCACCACCGAAAGGGTCCGGCGCGCTTCCGTAGCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAGGGTGTAGTCACCGAGATCGATCCACGATCCCGGTCGCGGCGCCCCGTTGGCCCGCGTCAGCTTCCGCCATCCGTTCAGGTACAAGAAGCAGAACGAGCTCTTCGTCGCCGCCGAGGGAATCTACACCGGTCAGTTCATCTACTGTGGGAAGAAGGCCAATTTGGTGGTCGGAAATGTGTTGCCTCTCAGATCGATCCCGGAGGGAGCCGTCGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

115

Amino Acids

12.94

Weight (kDa)

11.88

Isoelectric Point (pI)

68.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	2 - 49	1.1e-08	Ribosomal Proteins L2, RNA binding N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	165
AccII	CGCG	3 cut(s)	82, 163, 181
AciI	CCGC	5 cut(s)	35, 163, 179, 191, 235
AclWI	GGATC	3 cut(s)	140, 147, 314
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	70, 162
AgeI	ACCGGT	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	3 cut(s)	20, 187, 224
AluI	AGCT	3 cut(s)	20, 187, 224
Alw21I	GWGCWC	2 cut(s)	22, 226
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	3 cut(s)	140, 147, 314
AoxI	GGCC	2 cut(s)	175, 280
AsiGI	ACCGGT	1 cut(s)	252
AspLEI	GCGC	4 cut(s)	82, 84, 111, 168
AspS9I	GGNCC	2 cut(s)	74, 176
AsuC2I	CCSGG	2 cut(s)	157, 324
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	165
BanII	GRGCYC	2 cut(s)	22, 226
Bbv12I	GWGCWC	2 cut(s)	22, 226
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	2 cut(s)	130, 318
BcnI	CCSGG	2 cut(s)	157, 324
BcoDI	GTCTC	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	169
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	164, 235
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	2 cut(s)	165, 236
Bme1390I	CCNGG	2 cut(s)	157, 324
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	74, 176
BmiI	GGNNCC	4 cut(s)	40, 75, 167, 332
BmrFI	CCNGG	2 cut(s)	157, 324
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	157, 324
Bsa29I	ATCGAT	2 cut(s)	144, 318
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	252
BsaXI	ACNNNNNCTCC	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 162
Bse118I	RCCGGY	1 cut(s)	252
BseCI	ATCGAT	2 cut(s)	144, 318
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	12, 194
BseLI	CCNNNNNNNGG	2 cut(s)	70, 162
BseMII	CTCAG	2 cut(s)	35, 326
BsePI	GCGCGC	1 cut(s)	80
Bsh1236I	CGCG	3 cut(s)	82, 163, 181
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	177, 282
BshNI	GGYRCC	1 cut(s)	165
BshTI	ACCGGT	1 cut(s)	252
BshVI	ATCGAT	2 cut(s)	144, 318
BsiEI	CGRYCG	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	22, 226
BsiSI	CCGG	4 cut(s)	77, 157, 253, 324
BslI	CCNNNNNNNGG	2 cut(s)	70, 162
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	177, 282
Bsp1286I	GDGCHC	2 cut(s)	22, 226
Bsp143I	GATC	5 cut(s)	141, 145, 152, 315, 319
Bsp1720I	GCTNAGC	1 cut(s)	21
BspACI	CCGC	5 cut(s)	35, 163, 179, 191, 235
BspANI	GGCC	2 cut(s)	177, 282
BspCNI	CTCAG	2 cut(s)	34, 325
BspDI	ATCGAT	2 cut(s)	144, 318
BspFNI	CGCG	3 cut(s)	82, 163, 181
BspLI	GGNNCC	4 cut(s)	40, 75, 167, 332
BspPI	GGATC	3 cut(s)	140, 147, 314
BspQI	GCTCTTC	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	238
BssHII	GCGCGC	1 cut(s)	80
BssMI	GATC	5 cut(s)	141, 145, 152, 315, 319
BssNI	GRCGYC	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	82, 107, 179
BstDEI	CTNAG	2 cut(s)	21, 312
BstF5I	GGATG	2 cut(s)	12, 194
BstFNI	CGCG	3 cut(s)	82, 163, 181
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	4 cut(s)	82, 84, 111, 168
BstKTI	GATC	5 cut(s)	144, 148, 155, 318, 322
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	5 cut(s)	141, 145, 152, 315, 319
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 174, 221
BstSCI	CCNGG	2 cut(s)	155, 322
BstUI	CGCG	3 cut(s)	82, 163, 181
BstXI	CCANNNNNNTGG	1 cut(s)	290
Bsu15I	ATCGAT	2 cut(s)	144, 318
BsuRI	GGCC	2 cut(s)	177, 282
BsuTUI	ATCGAT	2 cut(s)	144, 318
BtsCI	GGATG	2 cut(s)	12, 194
Cac8I	GCNNGC	3 cut(s)	82, 107, 179
CfoI	GCGC	4 cut(s)	82, 84, 111, 168
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	74, 176
ClaI	ATCGAT	2 cut(s)	144, 318
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	206
CspAI	ACCGGT	1 cut(s)	252
CviJI	RGCY	8 cut(s)	20, 93, 117, 177, 187, 224, 282, 333
CviKI_1	RGCY	8 cut(s)	20, 93, 117, 177, 187, 224, 282, 333
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	21, 312
DinI	GGCGCC	1 cut(s)	167
DpnI	GATC	5 cut(s)	143, 147, 154, 317, 321
DpnII	GATC	5 cut(s)	141, 145, 152, 315, 319
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	2 cut(s)	20, 224
Eco24I	GRGCYC	2 cut(s)	22, 226
Eco47I	GGWCC	1 cut(s)	74
Eco53kI	GAGCTC	2 cut(s)	20, 224
EcoICRI	GAGCTC	2 cut(s)	20, 224
EcoT38I	GRGCYC	2 cut(s)	22, 226
EgeI	GGCGCC	1 cut(s)	167
EheI	GGCGCC	1 cut(s)	167
FauI	CCCGC	2 cut(s)	28, 186
Fnu4HI	GCNGC	2 cut(s)	164, 235
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	2 cut(s)	22, 226
Fsp4HI	GCNGC	2 cut(s)	164, 235
GlaI	GCGC	4 cut(s)	81, 83, 110, 167
GluI	GCNGC	2 cut(s)	164, 235
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	177, 282
HapII	CCGG	4 cut(s)	77, 157, 253, 324
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	4 cut(s)	82, 84, 111, 168
Hin1I	GRCGYC	1 cut(s)	166
Hin6I	GCGC	4 cut(s)	80, 82, 109, 166
HinP1I	GCGC	4 cut(s)	80, 82, 109, 166
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	4 cut(s)	77, 157, 253, 324
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	3 cut(s)	17, 297, 315
Hpy99I	CGWCG	2 cut(s)	234, 339
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 174, 221
HpyF3I	CTNAG	2 cut(s)	21, 312
Hsp92I	GRCGYC	1 cut(s)	166
HspAI	GCGC	4 cut(s)	80, 82, 109, 166
KasI	GGCGCC	1 cut(s)	165
Kzo9I	GATC	5 cut(s)	141, 145, 152, 315, 319
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	5 cut(s)	90, 170, 188, 266, 337
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	5 cut(s)	143, 147, 154, 317, 321
MboI	GATC	5 cut(s)	141, 145, 152, 315, 319
MboII	GAAGA	2 cut(s)	218, 287
MhlI	GDGCHC	2 cut(s)	22, 226
MluCI	AATT	1 cut(s)	284
Mly113I	GGCGCC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	5 cut(s)	104, 131, 233, 319, 320
MspI	CCGG	4 cut(s)	77, 157, 253, 324
MspR9I	CCNGG	2 cut(s)	157, 324
MvnI	CGCG	3 cut(s)	82, 163, 181
MwoI	GCNNNNNNNGC	3 cut(s)	90, 174, 221
NarI	GGCGCC	1 cut(s)	166
NciI	CCSGG	2 cut(s)	157, 324
NdeII	GATC	5 cut(s)	141, 145, 152, 315, 319
NlaIV	GGNNCC	4 cut(s)	40, 75, 167, 332
NmeAIII	GCCGAG	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	133
PauI	GCGCGC	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 226, 235
PfeI	GAWTC	1 cut(s)	244
PfoI	TCCNGGA	1 cut(s)	322
PinAI	ACCGGT	1 cut(s)	252
PkrI	GCNGC	2 cut(s)	165, 236
PluTI	GGCGCC	1 cut(s)	169
Psp124BI	GAGCTC	2 cut(s)	22, 226
PspN4I	GGNNCC	4 cut(s)	40, 75, 167, 332
PspPI	GGNCC	2 cut(s)	74, 176
PteI	GCGCGC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SacI	GAGCTC	2 cut(s)	22, 226
SapI	GCTCTTC	1 cut(s)	231
SatI	GCNGC	2 cut(s)	164, 235
Sau3AI	GATC	5 cut(s)	141, 145, 152, 315, 319
Sau96I	GGNCC	2 cut(s)	74, 176
ScrFI	CCNGG	2 cut(s)	157, 324
SduI	GDGCHC	2 cut(s)	22, 226
SetI	ASST	5 cut(s)	22, 123, 189, 207, 226
SfoI	GGCGCC	1 cut(s)	167
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	284
SsiI	CCGC	5 cut(s)	35, 163, 179, 191, 235
SspDI	GGCGCC	1 cut(s)	165
SstI	GAGCTC	2 cut(s)	22, 226
StyD4I	CCNGG	2 cut(s)	155, 322
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	96, 144, 318
TasI	AATT	1 cut(s)	284
TauI	GCSGC	2 cut(s)	166, 237
TfiI	GAWTC	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	3 cut(s)	31, 77, 187
VpaK11BI	GGWCC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.