pycom05g25980

Hydrolase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
27273620 .. 27274314
695 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGTCATTTATAAAGCATTCTCTGCGTCTCTTATTTTTATTTGAAAAAACCATACGTTTGAATATTGCAGTTATTTCAAAAGATGGTGCTGGACAGTTGGATCTTCTTATCTTGGACACACTACACAGGAAACTTATGCTTTCAACTTTTCTGTTGTTTTCAAATAGCGAAGGGATTCAAGTGCAGCTTGCGCATGATGGTTTGAGAGTGTCCATAGACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.38

Weight (kDa)

8.25

Isoelectric Point (pI)

25.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
Acc16I TGCGCA 1 cut(s) 192
AclWI GGATC 1 cut(s) 108
AgsI TTSAA 6 cut(s) 44, 61, 78, 144, 162, 179
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 184
Asp700I GAANNNNTTC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 77, 191
BcoDI GTCTC 1 cut(s) 32
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 100
BspPI GGATC 1 cut(s) 108
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 189
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 22, 190
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 193
CseI GACGC 1 cut(s) 14
CviAII CATG 1 cut(s) 194
CviJI RGCY 1 cut(s) 187
CviKI_1 RGCY 1 cut(s) 187
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 197
FaiI YATR 6 cut(s) 11, 53, 137, 195, 215, 223
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 185
FspEI CC 9 cut(s) 64, 69, 75, 83, 98, 112, 156, 157, 183
FspI TGCGCA 1 cut(s) 192
GlaI GCGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 185
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 68, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 190
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 75, 112
Lsp1109I GCAGC 1 cut(s) 196
MaeII ACGT 1 cut(s) 55
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 95
MflI RGATCY 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 22, 190
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 197
NsbI TGCGCA 1 cut(s) 192
PctI GAATGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 1 cut(s) 186
PsiI TTATAA 1 cut(s) 11
PsuI RGATCY 1 cut(s) 100
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 1 cut(s) 100
SetI ASST 3 cut(s) 58, 189, 222
SgeI CNNG 6 cut(s) 102, 124, 139, 191, 200, 206
SspI AATATT 1 cut(s) 64
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 58
TfiI GAWTC 1 cut(s) 175
TseI GCWGC 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.