Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

27303334 .. 27303693

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAGGTCTTATTGCTGTTGTCAACCGCGTTGAATATCACTGTACCTGAACCTCCTACGGAGCTGCAAGAGGCTTTGTCAACAGAGCTACGCGCAATGCATATAACTGTACCTGAACCTCCTACGGAGCTGCAAGAGGCTTTGTCAACAGAGCTACGTGCAAGGCATACCACTGTACCTGAACCTCCTGCGGAACTGCAAGAGGCTTTGTCAACAGAGCTACGCGCAAGGCAACAACGTATAGCAGAAATCACAGAGATGTTTCATGTTAGTTATATCTTTGCTAATGATCTTTTTGCTATCGCTTTATTTTATTATATACTACATAATATTAGAAAAATATCATTTCTAATGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

120

Amino Acids

13.65

Weight (kDa)

4.97

Isoelectric Point (pI)

87.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	29, 93, 225
AciI	CCGC	2 cut(s)	27, 191
AfaI	GTAC	4 cut(s)	45, 111, 177, 356
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	5 cut(s)	64, 88, 130, 154, 220
AluI	AGCT	5 cut(s)	64, 88, 130, 154, 220
ApeKI	GCWGC	2 cut(s)	64, 130
AspLEI	GCGC	2 cut(s)	95, 227
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BbvI	GCAGC	2 cut(s)	51, 117
BisI	GCNGC	2 cut(s)	65, 131
BlsI	GCNGC	2 cut(s)	66, 132
BsaAI	YACGTR	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	51, 117
Bsh1236I	CGCG	3 cut(s)	29, 93, 225
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	2 cut(s)	27, 191
BspFNI	CGCG	3 cut(s)	29, 93, 225
BsrDI	GCAATG	1 cut(s)	102
BssMI	GATC	1 cut(s)	289
Bst4CI	ACNGT	3 cut(s)	43, 109, 175
BstBAI	YACGTR	1 cut(s)	158
BstFNI	CGCG	3 cut(s)	29, 93, 225
BstHHI	GCGC	2 cut(s)	95, 227
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstUI	CGCG	3 cut(s)	29, 93, 225
BstV1I	GCAGC	2 cut(s)	51, 117
BtsIMutI	CAGTG	2 cut(s)	39, 171
CfoI	GCGC	2 cut(s)	95, 227
Csp6I	GTAC	4 cut(s)	44, 110, 176, 355
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	8 cut(s)	64, 74, 88, 130, 140, 154, 206, 220
CviKI_1	RGCY	8 cut(s)	64, 74, 88, 130, 140, 154, 206, 220
CviQI	GTAC	4 cut(s)	44, 110, 176, 355
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	102
FaeI	CATG	1 cut(s)	269
FaiI	YATR	9 cut(s)	102, 104, 168, 242, 267, 276, 318, 320, 327
FatI	CATG	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	65, 131
Fsp4HI	GCNGC	2 cut(s)	65, 131
GlaI	GCGC	2 cut(s)	94, 226
GluI	GCNGC	2 cut(s)	65, 131
HhaI	GCGC	2 cut(s)	95, 227
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	2 cut(s)	93, 225
HinP1I	GCGC	2 cut(s)	93, 225
HincII	GTYRAC	4 cut(s)	24, 81, 147, 213
HindII	GTYRAC	4 cut(s)	24, 81, 147, 213
Hpy166II	GTNNAC	4 cut(s)	24, 81, 147, 213
Hpy8I	GTNNAC	4 cut(s)	24, 81, 147, 213
HpyCH4III	ACNGT	3 cut(s)	43, 109, 175
HpyCH4IV	ACGT	2 cut(s)	157, 238
HpyCH4V	TGCA	6 cut(s)	4, 67, 100, 133, 161, 199
HpySE526I	ACGT	2 cut(s)	157, 238
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	2 cut(s)	93, 225
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	61, 127
LpnPI	CCDG	4 cut(s)	60, 126, 192, 201
Lsp1109I	GCAGC	2 cut(s)	51, 117
MaeII	ACGT	2 cut(s)	157, 238
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MnlI	CCTC	6 cut(s)	63, 64, 129, 130, 195, 196
Mph1103I	ATGCAT	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	257
MvnI	CGCG	3 cut(s)	29, 93, 225
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	66, 132
Ppu21I	YACGTR	1 cut(s)	158
RsaI	GTAC	4 cut(s)	45, 111, 177, 356
RsaNI	GTAC	4 cut(s)	44, 110, 176, 355
RseI	CAYNNNNRTG	1 cut(s)	257
SatI	GCNGC	2 cut(s)	65, 131
Sau3AI	GATC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	257
SsiI	CCGC	2 cut(s)	27, 191
SspI	AATATT	1 cut(s)	331
TaaI	ACNGT	3 cut(s)	43, 109, 175
TaiI	ACGT	2 cut(s)	160, 241
TatI	WGTACW	1 cut(s)	354
TscAI	CASTG	2 cut(s)	46, 178
TseI	GCWGC	2 cut(s)	64, 130
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	2 cut(s)	74, 140
TspRI	CASTG	2 cut(s)	46, 178
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.