pycom05g26140

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
27408338 .. 27409725
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 618 bp
ATGCTTGCTGTTGATTGGGAAGAAGTTCGCCCAGATGTAGTGATACTAGGAAAAGCATTGGGTGGTGGAGTGATACCCGTAAGTGCGGTGCTTGCGGACAAAGATGTAATGCTTTGTATCCGACCCGGAGAGCATGGAAGCACCTTCGGGGGTAATCCGTTGGCCAGTGCAGTCGCTGTTGCCGCACTAGATGTTATCAGAGATGAGAAGCTTGCTGAAAGATCAGCCAAAATGGGACAGGAGCTTAGGAATCAGCTTGTCAAGATTCAGCAGCAATTCCCAAACTGCATAAAGGAAGTTCGAGGAAGAGGTTTGTTCAACGCTGTGGAGCTCAATAGCAAGAATCTGTCCCCTGTTTCTGCTTACGATATCTGCCTACAGTTGAAGGAGAGAGGAGTTCTTGCCAAGCCAACACACGATACTATTATCCGATTGACTCCTCCGCTCTCCATAAGTTTGGAGGAAGTCCAAGAAGGATCAAAAGCACTTTCTGATGTTCTGGAACATGATCTACCAAAGATGCAGAAGGAAAAGCCCGAGAACTCGTCGTCGACTGCTTCTAACATATGTGACCGTTGTGGGCGAAACCTGTATGATTCTACACACAACAATCACTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

206

Amino Acids

22.32

Weight (kDa)

5.98

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 2 - 167 2.4e-46 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 551
AciI CCGC 4 cut(s) 86, 95, 183, 443
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 1 cut(s) 162
AgsI TTSAA 2 cut(s) 319, 385
AluBI AGCT 4 cut(s) 211, 244, 256, 331
AluI AGCT 4 cut(s) 211, 244, 256, 331
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 1 cut(s) 484
AlwNI CAGNNNCTG 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 536
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 271
Asp700I GAANNNNTTC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 126
AvaI CYCGRG 1 cut(s) 536
BalI TGGCCA 1 cut(s) 164
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 283
BciVI GTATCC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 126
BfaI CTAG 2 cut(s) 47, 188
BfmI CTRYAG 1 cut(s) 377
BfuI GTATCC 1 cut(s) 128
BisI GCNGC 2 cut(s) 183, 272
BlsI GCNGC 2 cut(s) 184, 273
Bme1390I CCNGG 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 536
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 510
Bpu10I CCTNAGC 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 165
BseRI GAGGAG 2 cut(s) 408, 429
BseXI GCAGC 1 cut(s) 283
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 536
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 2 cut(s) 249, 334
BsmFI GGGAC 2 cut(s) 249, 334
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 3 cut(s) 221, 476, 508
BspACI CCGC 4 cut(s) 86, 95, 183, 443
BspANI GGCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 484
BsrBI CCGCTC 1 cut(s) 445
BsrI ACTGG 1 cut(s) 165
BssMI GATC 3 cut(s) 221, 476, 508
Bst4CI ACNGT 2 cut(s) 381, 575
Bst6I CTCTTC 1 cut(s) 301
BstC8I GCNNGC 3 cut(s) 6, 93, 213
BstDEI CTNAG 1 cut(s) 245
BstKTI GATC 3 cut(s) 224, 479, 511
BstMBI GATC 3 cut(s) 221, 476, 508
BstMWI GCNNNNNNNGC 2 cut(s) 92, 182
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 283
BstXI CCANNNNNNTGG 1 cut(s) 457
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 172, 613
Cac8I GCNNGC 3 cut(s) 6, 93, 213
CaiI CAGNNNCTG 1 cut(s) 176
CviAII CATG 2 cut(s) 134, 506
CviJI RGCY 8 cut(s) 164, 211, 227, 244, 256, 331, 409, 535
CviKI_1 RGCY 8 cut(s) 164, 211, 227, 244, 256, 331, 409, 535
DdeI CTNAG 1 cut(s) 245
DpnI GATC 3 cut(s) 223, 478, 510
DpnII GATC 3 cut(s) 221, 476, 508
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Ecl136II GAGCTC 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 331
EcoRV GATATC 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 333
FaeI CATG 2 cut(s) 137, 509
FaiI YATR 7 cut(s) 135, 290, 452, 507, 566, 568, 594
FaqI GGGAC 2 cut(s) 249, 334
FatI CATG 2 cut(s) 133, 505
FauNDI CATATG 1 cut(s) 566
FblI GTMKAC 1 cut(s) 551
Fnu4HI GCNGC 2 cut(s) 183, 272
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 183, 272
FspBI CTAG 2 cut(s) 47, 188
GluI GCNGC 2 cut(s) 183, 272
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 126
Hin1II CATG 2 cut(s) 137, 509
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 5 cut(s) 250, 265, 343, 436, 596
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 552
Hpy188I TCNGA 4 cut(s) 122, 200, 431, 493
Hpy188III TCNNGA 2 cut(s) 262, 500
Hpy8I GTNNAC 1 cut(s) 552
Hpy99I CGWCG 2 cut(s) 550, 553
HpyAV CCTTC 4 cut(s) 154, 379, 467, 520
HpyCH4III ACNGT 2 cut(s) 381, 575
HpyCH4V TGCA 3 cut(s) 170, 288, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 182
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 2 cut(s) 137, 509
Kzo9I GATC 3 cut(s) 221, 476, 508
LmnI GCTCC 2 cut(s) 241, 328
LpnPI CCDG 7 cut(s) 45, 139, 178, 224, 366, 485, 602
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 510
MaeI CTAG 2 cut(s) 47, 188
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 223, 478, 510
MbiI CCGCTC 1 cut(s) 445
MboI GATC 3 cut(s) 221, 476, 508
MboII GAAGA 2 cut(s) 32, 318
MhlI GDGCHC 1 cut(s) 333
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 1 cut(s) 275
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 5 cut(s) 296, 302, 386, 450, 454
Mox20I TGGCCA 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 164
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 92, 182
NciI CCSGG 1 cut(s) 126
NdeI CATATG 1 cut(s) 566
NdeII GATC 3 cut(s) 221, 476, 508
NlaIII CATG 2 cut(s) 137, 509
NmuCI GTSAC 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 4 cut(s) 250, 265, 343, 596
PkrI GCNGC 2 cut(s) 184, 273
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp124BI GAGCTC 1 cut(s) 333
PsrI GAACNNNNNNTAC 2 cut(s) 495, 527
PstNI CAGNNNCTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 333
SalI GTCGAC 1 cut(s) 550
SatI GCNGC 2 cut(s) 183, 272
Sau3AI GATC 3 cut(s) 221, 476, 508
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 333
SetI ASST 7 cut(s) 146, 213, 246, 258, 313, 333, 591
SfaNI GCATC 1 cut(s) 510
SfcI CTRYAG 1 cut(s) 377
Sse9I AATT 1 cut(s) 275
SsiI CCGC 4 cut(s) 86, 95, 183, 443
SspMI CTAG 2 cut(s) 47, 188
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 381, 575
TaqI TCGA 2 cut(s) 301, 551
TasI AATT 1 cut(s) 275
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 4 cut(s) 250, 265, 343, 596
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 569
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 551
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 2 cut(s) 47, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.