Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

27676120 .. 27677655

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTACGAGGAAGCAATGAAGGGTGTCAGACACCGTCTTGTTCAGAAATCAATCCCCAATGGATTGGTTTTTGTAGGGGAATTGCCCTTCGGAGCTGATAGTTCTTTTAGTTCCAAAATGGACCACCTGGTATGTTTCTTGCCTGGCACTCTTGCACTCGGGGCCACAAAAGGCCTTACCAAGGAAGAAGCGATGAAAAATAATATGCTTAACTTTGAGGACCTAGAAAATTTGAAACTTGCAGAAGATCTGGCTAAAACATGCTTTGAAATGTATTCAGTAACCTCTACTGGTCTTGCTCCAGAAATTGCTTATTTCCATACAAAGGAATTTTCTGAAGGAGGTCTTGATGGTGGTAACAAGAGTTCTGAATATATGAATGACATAATCATCAAGCCTGCTGATCGTCATAATCTCTTGCGTCCTGAAACAGTGGAATCATTGTTTTTCTTGTACCGCATCACAGAAGATCCAAAATATCGTGAATGGGGCTGGCAGATTTTTGAAGCATTTGAGAAATATACCAGGGTTGATACTGGTGGATACAGTTCTTTGGATGATGTAACTTCAGTTCCTCCTCATAAAAGAGACAAGATGGAGACGTTCTTTTTGGGCGAGACTCTGAAGTACTTGTACTTGCTGTTTGGAGATAGTTCTGTTATTCCATTGGATAAGTTTGTTTTTAACACAGAAGCTCATCCTATTCCAATTGAAGGCACTGCTAAGATGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006491 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

245

Amino Acids

27.6

Weight (kDa)

5.07

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	1 - 237	4.7e-81	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	457
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	2 cut(s)	229, 329
AcuI	CTGAAG	3 cut(s)	357, 552, 644
AfaI	GTAC	4 cut(s)	5, 455, 629, 635
AfiI	CCNNNNNNNGG	3 cut(s)	181, 325, 713
AgsI	TTSAA	4 cut(s)	235, 269, 506, 713
AjnI	CCWGG	3 cut(s)	126, 142, 524
AluBI	AGCT	2 cut(s)	95, 695
AluI	AGCT	2 cut(s)	95, 695
Alw26I	GTCTC	3 cut(s)	582, 593, 611
AlwI	GGATC	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	162, 172
ApoI	RAATTY	2 cut(s)	229, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	592, 624
AspS9I	GGNCC	3 cut(s)	121, 162, 220
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	2 cut(s)	121, 220
BarI	GAAGNNNNNNTAC	2 cut(s)	617, 649
BccI	CCATC	3 cut(s)	344, 589, 721
BciT130I	CCWGG	3 cut(s)	128, 144, 526
BciVI	GTATCC	1 cut(s)	536
BcoDI	GTCTC	3 cut(s)	582, 593, 611
BfaI	CTAG	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	247
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	3 cut(s)	128, 144, 526
Bme18I	GGWCC	2 cut(s)	121, 220
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	3 cut(s)	121, 162, 220
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	3 cut(s)	128, 144, 526
BmsI	GCATC	1 cut(s)	468
BpmI	CTGGAG	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	180, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 325, 713
Bse1I	ACTGG	2 cut(s)	295, 541
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	3 cut(s)	128, 144, 526
BseDI	CCNNGG	2 cut(s)	180, 525
BseGI	GGATG	2 cut(s)	562, 697
BseLI	CCNNNNNNNGG	3 cut(s)	181, 325, 713
BseMI	GCAATG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	295, 541
BseRI	GAGGAG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	164, 174
BsiHKCI	CYCGRG	1 cut(s)	158
BslI	CCNNNNNNNGG	3 cut(s)	181, 325, 713
BsmAI	GTCTC	3 cut(s)	582, 593, 611
BsmBI	CGTCTC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	164, 174
BsoBI	CYCGRG	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	247, 403, 469
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	2 cut(s)	164, 174
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	295, 541
BssECI	CCNNGG	2 cut(s)	180, 525
BssMI	GATC	3 cut(s)	247, 403, 469
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	3 cut(s)	128, 144, 526
Bst4CI	ACNGT	3 cut(s)	35, 433, 548
BstC8I	GCNNGC	2 cut(s)	399, 494
BstDEI	CTNAG	1 cut(s)	723
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	562, 697
BstKTI	GATC	3 cut(s)	250, 406, 472
BstMAI	GTCTC	3 cut(s)	582, 593, 611
BstMBI	GATC	3 cut(s)	247, 403, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	3 cut(s)	128, 144, 526
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	3 cut(s)	126, 142, 524
BstX2I	RGATCY	2 cut(s)	247, 469
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	2 cut(s)	247, 469
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	164, 174
BtgZI	GCGATG	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	562, 697
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	2 cut(s)	438, 717
Cac8I	GCNNGC	2 cut(s)	399, 494
Cfr13I	GGNCC	3 cut(s)	121, 162, 220
CseI	GACGC	1 cut(s)	410
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	4 cut(s)	4, 454, 628, 634
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	7 cut(s)	95, 164, 174, 254, 397, 492, 695
CviKI_1	RGCY	7 cut(s)	95, 164, 174, 254, 397, 492, 695
CviQI	GTAC	4 cut(s)	4, 454, 628, 634
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	3 cut(s)	249, 405, 471
DpnII	GATC	3 cut(s)	247, 403, 469
Eco130I	CCWWGG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	121, 220
Eco57I	CTGAAG	3 cut(s)	357, 552, 644
Eco88I	CYCGRG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	3 cut(s)	126, 142, 524
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	593
FaeI	CATG	1 cut(s)	264
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FatI	CATG	1 cut(s)	260
FokI	GGATG	2 cut(s)	569, 684
FspBI	CTAG	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	164, 174
HgaI	GACGC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	264
HinfI	GANTC	2 cut(s)	437, 619
Hpy188I	TCNGA	6 cut(s)	29, 45, 92, 337, 370, 624
Hpy188III	TCNNGA	4 cut(s)	302, 347, 425, 482
HpyAV	CCTTC	4 cut(s)	13, 97, 332, 707
HpyCH4III	ACNGT	3 cut(s)	35, 433, 548
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	2 cut(s)	155, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	723
HpySE526I	ACGT	1 cut(s)	602
Hsp92II	CATG	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	247, 403, 469
LmnI	GCTCC	2 cut(s)	92, 304
LweI	GCATC	1 cut(s)	468
MabI	ACCWGGT	1 cut(s)	126
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	3 cut(s)	280, 356, 562
MalI	GATC	3 cut(s)	249, 405, 471
MboI	GATC	3 cut(s)	247, 403, 469
MboII	GAAGA	3 cut(s)	197, 257, 479
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	2 cut(s)	247, 469
MluCI	AATT	5 cut(s)	80, 229, 306, 329, 708
MlyI	GAGTC	1 cut(s)	613
MnlI	CCTC	5 cut(s)	211, 295, 335, 585, 588
MseI	TTAA	2 cut(s)	210, 684
MspR9I	CCNGG	3 cut(s)	128, 144, 526
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	3 cut(s)	128, 144, 526
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	3 cut(s)	247, 403, 469
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	437
PflFI	GACNNNGTC	1 cut(s)	33
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	3 cut(s)	126, 142, 524
PspGI	CCWGG	3 cut(s)	126, 142, 524
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	121, 162, 220
PspPPI	RGGWCCY	1 cut(s)	220
PsrI	GAACNNNNNNTAC	4 cut(s)	349, 381, 555, 587
PsuI	RGATCY	2 cut(s)	247, 469
PsyI	GACNNNGTC	1 cut(s)	33
RsaI	GTAC	4 cut(s)	5, 455, 629, 635
RsaNI	GTAC	4 cut(s)	4, 454, 628, 634
SaqAI	TTAA	2 cut(s)	210, 684
Sau3AI	GATC	3 cut(s)	247, 403, 469
Sau96I	GGNCC	3 cut(s)	121, 162, 220
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	613
ScrFI	CCNGG	3 cut(s)	128, 144, 526
SetI	ASST	7 cut(s)	97, 129, 225, 287, 346, 605, 697
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	468
SinI	GGWCC	2 cut(s)	121, 220
Sse9I	AATT	5 cut(s)	80, 229, 306, 329, 708
SseBI	AGGCCT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	174
StyD4I	CCNGG	3 cut(s)	126, 142, 524
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	35, 433, 548
TaiI	ACGT	1 cut(s)	605
TasI	AATT	5 cut(s)	80, 229, 306, 329, 708
TatI	WGTACW	2 cut(s)	627, 633
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	2 cut(s)	210, 684
Tru9I	TTAA	2 cut(s)	210, 684
TscAI	CASTG	2 cut(s)	438, 724
TspDTI	ATGAA	3 cut(s)	32, 209, 392
TspRI	CASTG	2 cut(s)	438, 724
Tth111I	GACNNNGTC	1 cut(s)	33
VpaK11BI	GGWCC	2 cut(s)	121, 220
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	2 cut(s)	229, 329
XceI	RCATGY	1 cut(s)	264
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.