pycom05g26850

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
27990359 .. 27991423
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
ATGGCACAAAGCCTAGAAAAAGAATGTACCCCAAGAAGAAGACTTAAAAATGTGAGCCAAGTAAGAATCCGGACATTTTTTGCTTGGTTTGCCTTGATCATCAAGCATCACCTCCTTTACAGCCCCACACATTTAGGGACCAACACCCTCAATCGACCTCTTTCTGCTTTAAGACATGCAATAACAAGTACAAATCCTTTCTGCATTCCAACAGCTTTTGATCCTACAGAAATGGCCAACCAGCAGTTAAAACCCGTTGCCGGTCTGCTTTTGGTTCTCAATTTATGCATGTATGTCATCGTCTTGGGCATTGGAAGCTGGGCCATCAACAGAGCAATCGACCACGGTTTCGTTATTGGTCCTGATATTCATCTCCCGGCACATTTTTCCCCCATATACTTCCCCATGGGAAATGCTGCGACCGGGTTCTTTGTGACATTCGCGCTGCTCGCCGGAGTTGTTGGCGCTGCTTCAGCTATTTCCGGTATCAACCATCTTCGATCTTGGACCTCTGAGAGCTTGCCGTCTGCAGCCACAGCTGCTACCATTGCCTGGACCCTCACCGTACTTGCCATGGGCTTCGGTTGCAAGGAGATCGAGCTTCGGATCAGAAATTCCCGCTTGAGAACAATGGAGGCCTTCTTGATCATCCTTACCGCGACGCAGCTTCTGTATTTAGCAGCCATTCATACCGTTGTATCGAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

237

Amino Acids

25.95

Weight (kDa)

10.12

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 92 - 231 2.5e-64 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 552
AccII CGCG 2 cut(s) 443, 659
AccIII TCCGGA 1 cut(s) 69
AciI CCGC 2 cut(s) 619, 657
AclWI GGATC 2 cut(s) 215, 614
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 3 cut(s) 28, 190, 567
AfiI CCNNNNNNNGG 2 cut(s) 260, 552
AjnI CCWGG 1 cut(s) 551
AluBI AGCT 7 cut(s) 215, 318, 476, 519, 539, 601, 667
AluI AGCT 7 cut(s) 215, 318, 476, 519, 539, 601, 667
AlwI GGATC 2 cut(s) 215, 614
AlwNI CAGNNNCTG 1 cut(s) 670
Aor13HI TCCGGA 1 cut(s) 69
AoxI GGCC 3 cut(s) 234, 321, 636
ApeKI GCWGC 7 cut(s) 416, 445, 467, 530, 539, 664, 680
ApoI RAATTY 1 cut(s) 613
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 2 cut(s) 445, 467
AspS9I GGNCC 5 cut(s) 138, 321, 359, 507, 555
AsuC2I CCSGG 2 cut(s) 377, 424
AsuHPI GGTGA 2 cut(s) 101, 553
AvaII GGWCC 4 cut(s) 138, 359, 507, 555
BaeI ACNNNNGTAYC 1 cut(s) 681
BalI TGGCCA 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 46
BbvI GCAGC 7 cut(s) 403, 432, 454, 526, 542, 676, 692
BccI CCATC 2 cut(s) 332, 501
BceAI ACGGC 1 cut(s) 508
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 1 cut(s) 553
BclI TGATCA 2 cut(s) 96, 645
BcnI CCSGG 2 cut(s) 377, 424
BfaI CTAG 1 cut(s) 14
BfmI CTRYAG 2 cut(s) 225, 528
BfoI RGCGCY 1 cut(s) 468
BisI GCNGC 7 cut(s) 417, 446, 468, 531, 540, 665, 681
BlsI GCNGC 7 cut(s) 418, 447, 469, 532, 541, 666, 682
Bme1390I CCNGG 3 cut(s) 377, 424, 553
Bme18I GGWCC 4 cut(s) 138, 359, 507, 555
BmgT120I GGNCC 5 cut(s) 138, 321, 359, 507, 555
BmiI GGNNCC 2 cut(s) 139, 557
BmrFI CCNGG 3 cut(s) 377, 424, 553
BmsI GCATC 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 643
BpuMI CCSGG 2 cut(s) 377, 424
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 343, 405, 573
BsaWI WCCGGW 2 cut(s) 69, 482
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 552
Bse118I RCCGGY 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 69
BseBI CCWGG 1 cut(s) 553
BseDI CCNNGG 3 cut(s) 343, 405, 573
BseGI GGATG 1 cut(s) 648
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 260, 552
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 504
BseXI GCAGC 7 cut(s) 403, 432, 454, 526, 542, 676, 692
BseYI CCCAGC 1 cut(s) 318
Bsh1236I CGCG 2 cut(s) 443, 659
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 3 cut(s) 236, 323, 638
BsiEI CGRYCG 1 cut(s) 423
BsiSI CCGG 6 cut(s) 70, 261, 377, 423, 453, 483
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 2 cut(s) 260, 552
BsmFI GGGAC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 3 cut(s) 236, 323, 638
Bsp13I TCCGGA 1 cut(s) 69
Bsp143I GATC 6 cut(s) 96, 220, 500, 594, 606, 645
Bsp19I CCATGG 2 cut(s) 405, 573
BspACI CCGC 2 cut(s) 619, 657
BspANI GGCC 3 cut(s) 236, 323, 638
BspCNI CTCAG 1 cut(s) 505
BspEI TCCGGA 1 cut(s) 69
BspFNI CGCG 2 cut(s) 443, 659
BspLI GGNNCC 2 cut(s) 139, 557
BspMAI CTGCAG 1 cut(s) 532
BspPI GGATC 2 cut(s) 215, 614
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 343, 405, 573
BssMI GATC 6 cut(s) 96, 220, 500, 594, 606, 645
BssT1I CCWWGG 2 cut(s) 405, 573
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 3 cut(s) 347, 565, 694
BstC8I GCNNGC 2 cut(s) 450, 521
BstDEI CTNAG 1 cut(s) 513
BstDSI CCRYGG 3 cut(s) 343, 405, 573
BstF5I GGATG 1 cut(s) 648
BstFNI CGCG 2 cut(s) 443, 659
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 2 cut(s) 445, 467
BstKTI GATC 6 cut(s) 99, 223, 503, 597, 609, 648
BstMBI GATC 6 cut(s) 96, 220, 500, 594, 606, 645
BstMCI CGRYCG 1 cut(s) 423
BstMWI GCNNNNNNNGC 8 cut(s) 89, 315, 449, 473, 536, 539, 548, 585
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 2 cut(s) 179, 292
BstSCI CCNGG 3 cut(s) 375, 422, 551
BstSFI CTRYAG 2 cut(s) 225, 528
BstUI CGCG 2 cut(s) 443, 659
BstV1I GCAGC 7 cut(s) 403, 432, 454, 526, 542, 676, 692
BstV2I GAAGAC 1 cut(s) 46
BsuRI GGCC 3 cut(s) 236, 323, 638
BtgI CCRYGG 3 cut(s) 343, 405, 573
BtsCI GGATG 1 cut(s) 648
Cac8I GCNNGC 2 cut(s) 450, 521
CaiI CAGNNNCTG 1 cut(s) 670
CfoI GCGC 2 cut(s) 445, 467
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 5 cut(s) 138, 321, 359, 507, 555
CseI GACGC 1 cut(s) 670
Csp6I GTAC 3 cut(s) 27, 189, 566
CviAII CATG 4 cut(s) 176, 289, 406, 574
CviQI GTAC 3 cut(s) 27, 189, 566
DdeI CTNAG 1 cut(s) 513
DpnI GATC 6 cut(s) 98, 222, 502, 596, 608, 647
DpnII GATC 6 cut(s) 96, 220, 500, 594, 606, 645
EaeI YGGCCR 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 405, 573
Eco147I AGGCCT 1 cut(s) 638
Eco47I GGWCC 4 cut(s) 138, 359, 507, 555
Eco57I CTGAAG 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 551
EcoT14I CCWWGG 2 cut(s) 405, 573
EcoT22I ATGCAT 1 cut(s) 290
ErhI CCWWGG 2 cut(s) 405, 573
FaeI CATG 4 cut(s) 179, 292, 409, 577
FaiI YATR 9 cut(s) 177, 286, 290, 294, 395, 397, 407, 575, 690
FaqI GGGAC 1 cut(s) 151
FatI CATG 4 cut(s) 175, 288, 405, 573
FauI CCCGC 1 cut(s) 626
FbaI TGATCA 2 cut(s) 96, 645
Fnu4HI GCNGC 7 cut(s) 417, 446, 468, 531, 540, 665, 681
FokI GGATG 1 cut(s) 635
Fsp4HI GCNGC 7 cut(s) 417, 446, 468, 531, 540, 665, 681
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 444, 466
GluI GCNGC 7 cut(s) 417, 446, 468, 531, 540, 665, 681
GsaI CCCAGC 1 cut(s) 322
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 3 cut(s) 236, 323, 638
HapII CCGG 6 cut(s) 70, 261, 377, 423, 453, 483
HgaI GACGC 1 cut(s) 670
HhaI GCGC 2 cut(s) 445, 467
Hin1II CATG 4 cut(s) 179, 292, 409, 577
Hin6I GCGC 2 cut(s) 443, 465
HinP1I GCGC 2 cut(s) 443, 465
HinfI GANTC 1 cut(s) 66
HpaII CCGG 6 cut(s) 70, 261, 377, 423, 453, 483
HphI GGTGA 2 cut(s) 101, 553
Hpy188I TCNGA 3 cut(s) 514, 606, 611
Hpy188III TCNNGA 3 cut(s) 70, 362, 643
Hpy99I CGWCG 1 cut(s) 664
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 3 cut(s) 347, 565, 694
HpyCH4V TGCA 5 cut(s) 179, 204, 288, 530, 588
HpyF10VI GCNNNNNNNGC 8 cut(s) 89, 315, 449, 473, 536, 539, 548, 585
HpyF3I CTNAG 1 cut(s) 513
Hsp92II CATG 4 cut(s) 179, 292, 409, 577
HspAI GCGC 2 cut(s) 443, 465
Kpn2I TCCGGA 1 cut(s) 69
Ksp22I TGATCA 2 cut(s) 96, 645
Kzo9I GATC 6 cut(s) 96, 220, 500, 594, 606, 645
Lsp1109I GCAGC 7 cut(s) 403, 432, 454, 526, 542, 676, 692
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 433
MalI GATC 6 cut(s) 98, 222, 502, 596, 608, 647
MboI GATC 6 cut(s) 96, 220, 500, 594, 606, 645
MboII GAAGA 3 cut(s) 48, 51, 488
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 2 cut(s) 280, 613
MluNI TGGCCA 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 7 cut(s) 122, 158, 168, 520, 569, 628, 696
Mox20I TGGCCA 1 cut(s) 236
Mph1103I ATGCAT 1 cut(s) 290
MroI TCCGGA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 236
MseI TTAA 3 cut(s) 45, 170, 248
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 6 cut(s) 70, 261, 377, 423, 453, 483
MspR9I CCNGG 3 cut(s) 377, 424, 553
Mva1269I GAATGC 1 cut(s) 204
MvaI CCWGG 1 cut(s) 553
MvnI CGCG 2 cut(s) 443, 659
MwoI GCNNNNNNNGC 8 cut(s) 89, 315, 449, 473, 536, 539, 548, 585
NciI CCSGG 2 cut(s) 377, 424
NcoI CCATGG 2 cut(s) 405, 573
NdeII GATC 6 cut(s) 96, 220, 500, 594, 606, 645
NlaIII CATG 4 cut(s) 179, 292, 409, 577
NlaIV GGNNCC 2 cut(s) 139, 557
NmuCI GTSAC 1 cut(s) 433
NsiI ATGCAT 1 cut(s) 290
NspI RCATGY 2 cut(s) 179, 292
PceI AGGCCT 1 cut(s) 638
PctI GAATGC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 552
PkrI GCNGC 7 cut(s) 418, 447, 469, 532, 541, 666, 682
Psp6I CCWGG 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 318
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 2 cut(s) 139, 557
PspPI GGNCC 5 cut(s) 138, 321, 359, 507, 555
PstI CTGCAG 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 670
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 3 cut(s) 28, 190, 567
RsaNI GTAC 3 cut(s) 27, 189, 566
SaqAI TTAA 3 cut(s) 45, 170, 248
SatI GCNGC 7 cut(s) 417, 446, 468, 531, 540, 665, 681
Sau3AI GATC 6 cut(s) 96, 220, 500, 594, 606, 645
Sau96I GGNCC 5 cut(s) 138, 321, 359, 507, 555
ScrFI CCNGG 3 cut(s) 377, 424, 553
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 2 cut(s) 225, 528
SinI GGWCC 4 cut(s) 138, 359, 507, 555
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
Sse9I AATT 2 cut(s) 280, 613
SseBI AGGCCT 1 cut(s) 638
SsiI CCGC 2 cut(s) 619, 657
SspMI CTAG 1 cut(s) 14
StuI AGGCCT 1 cut(s) 638
StyD4I CCNGG 3 cut(s) 375, 422, 551
StyI CCWWGG 2 cut(s) 405, 573
TaaI ACNGT 3 cut(s) 347, 565, 694
TaqI TCGA 5 cut(s) 154, 339, 499, 597, 701
TasI AATT 2 cut(s) 280, 613
TatI WGTACW 1 cut(s) 188
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 3 cut(s) 45, 170, 248
Tru9I TTAA 3 cut(s) 45, 170, 248
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 7 cut(s) 416, 445, 467, 530, 539, 664, 680
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 2 cut(s) 359, 677
Van91I CCANNNNNTGG 1 cut(s) 552
VpaK11BI GGWCC 4 cut(s) 138, 359, 507, 555
XapI RAATTY 1 cut(s) 613
XceI RCATGY 2 cut(s) 179, 292
XspI CTAG 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.