pycom05g26990

exonuclease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
28085080 .. 28085745
666 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGACGTTCTTGGCTGTCAGCAAGCAGGTAGGTCAGCAGTTATCACTGAGGATTCAGATCTTATACCATTCATCTGACCCAGGAAACTTCTATCTGTGTGATATTATAATTCTTTCTGTATTCCAGATTATCTTTAAAATGGACAAATTTGGGCAAGGTGTTGAGTTTCAATATTCCATGCTACATAGGAACAAGCACTTGACTTTTTCAGGATTCACAAAACAGATGCTTCTAGTGATGTGTATTCTGAGTGGTTATGACTATTTAAAGTCGTTGCCTGGAATGGGACTGAAAGGGGCTCACATCCTTGTTAAAAAGTTCACAAGTTATGACAAGGTAATTAAGCACACGAAGTACAGTACTGCTTCGGTTCCTCCCCTATTTGAAGAATCATTCAAGAAAGCAATTTTGACCTTCCAGCATCAACGGGTTCATCGTTCCGTTTCTCAAGATATTGTATACTTGTCTGATATGTCTAATGATGTTGTGGATGATTTCGACTTCTTAGGACTATATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

19.89

Weight (kDa)

8.99

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028834)

Species Orthologous Gene IDs
malus_domestica MD05G1293400.v1.1
pyrus_communis pycom05g26990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 459
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 2 cut(s) 356, 361
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 3 cut(s) 170, 386, 397
AjnI CCWGG 2 cut(s) 79, 277
ApoI RAATTY 1 cut(s) 146
BanII GRGCYC 1 cut(s) 301
BciT130I CCWGG 2 cut(s) 81, 279
BfaI CTAG 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 16
BglII AGATCT 1 cut(s) 57
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 2 cut(s) 81, 279
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 81, 279
BmsI GCATC 2 cut(s) 216, 430
BpuEI CTTGAG 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse8I GATNNNNATC 1 cut(s) 56
BseBI CCWGG 2 cut(s) 81, 279
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 2 cut(s) 303, 496
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 2 cut(s) 38, 239
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 39, 240
BspLI GGNNCC 1 cut(s) 372
BspMI ACCTGC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 57
BssNAI GTATAC 1 cut(s) 460
Bst1107I GTATAC 1 cut(s) 460
Bst2UI CCWGG 2 cut(s) 81, 279
Bst4CI ACNGT 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 3 cut(s) 47, 248, 505
BstF5I GGATG 2 cut(s) 303, 496
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstNI CCWGG 2 cut(s) 81, 279
BstSCI CCNGG 2 cut(s) 79, 277
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BstZ17I GTATAC 1 cut(s) 460
BtsCI GGATG 2 cut(s) 303, 496
BtsIMutI CAGTG 1 cut(s) 44
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 355, 360
CviAII CATG 1 cut(s) 178
CviJI RGCY 2 cut(s) 14, 299
CviKI_1 RGCY 2 cut(s) 14, 299
CviQI GTAC 2 cut(s) 355, 360
DdeI CTNAG 3 cut(s) 47, 248, 505
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DraI TTTAAA 2 cut(s) 136, 267
Eco24I GRGCYC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 79, 277
EcoT38I GRGCYC 1 cut(s) 301
FaeI CATG 1 cut(s) 181
FaiI YATR 9 cut(s) 64, 107, 179, 186, 258, 330, 460, 473, 514
FaqI GGGAC 1 cut(s) 300
FatI CATG 1 cut(s) 177
FblI GTMKAC 1 cut(s) 459
FokI GGATG 2 cut(s) 290, 503
FriOI GRGCYC 1 cut(s) 301
FspBI CTAG 1 cut(s) 233
Hin1II CATG 1 cut(s) 181
HinfI GANTC 3 cut(s) 52, 213, 389
Hpy166II GTNNAC 2 cut(s) 321, 460
Hpy188I TCNGA 4 cut(s) 57, 76, 249, 469
Hpy188III TCNNGA 4 cut(s) 124, 210, 397, 449
Hpy8I GTNNAC 2 cut(s) 321, 460
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 5
HpyF3I CTNAG 3 cut(s) 47, 248, 505
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 1 cut(s) 181
Kzo9I GATC 1 cut(s) 57
LpnPI CCDG 8 cut(s) 11, 66, 93, 137, 195, 264, 291, 431
LweI GCATC 2 cut(s) 216, 430
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 5
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 398
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 4 cut(s) 108, 146, 339, 405
MnlI CCTC 2 cut(s) 42, 384
MseI TTAA 5 cut(s) 135, 266, 312, 342, 520
MspR9I CCNGG 2 cut(s) 81, 279
MvaI CCWGG 2 cut(s) 81, 279
NdeII GATC 1 cut(s) 57
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PfeI GAWTC 3 cut(s) 52, 213, 389
PsiI TTATAA 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 79, 277
PspGI CCWGG 2 cut(s) 79, 277
PspN4I GGNNCC 1 cut(s) 372
PsuI RGATCY 1 cut(s) 57
RsaI GTAC 2 cut(s) 356, 361
RsaNI GTAC 2 cut(s) 355, 360
SaqAI TTAA 5 cut(s) 135, 266, 312, 342, 520
Sau3AI GATC 1 cut(s) 57
ScaI AGTACT 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 81, 279
SduI GDGCHC 1 cut(s) 301
SetI ASST 6 cut(s) 8, 30, 34, 160, 339, 416
SfaNI GCATC 2 cut(s) 216, 430
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
Sse9I AATT 4 cut(s) 108, 146, 339, 405
SspI AATATT 1 cut(s) 173
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 79, 277
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 498
TasI AATT 4 cut(s) 108, 146, 339, 405
TatI WGTACW 2 cut(s) 354, 359
TfiI GAWTC 3 cut(s) 52, 213, 389
Tru1I TTAA 5 cut(s) 135, 266, 312, 342, 520
Tru9I TTAA 5 cut(s) 135, 266, 312, 342, 520
TscAI CASTG 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 60, 422
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 1 cut(s) 51
XapI RAATTY 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.