Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

28108079 .. 28109365

Gene Structure 1287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTTTTGAATTCCGGATATTGTATTCGATGTCAGTTCCCCTTATTAGGAATTGATCAGATGAAAACAGGTGAAGCAGCTTTACCATCGGGGTTCAGCTTCTCTAATTGCAGAACTAGTCTCTTGTGGAAGGTAACTGGGTTTGTTAGAAATTCGCTACTTCACGCGGTGGCTCCAAGTCCATTCAATATCAAGTGCTCCTACAAGCAAAGTAGAAAGCCTCTAACTAGTTCAAAACCGGTTGAGAAGAAAATAATCAAGAAGGCGGGAAAGAAAGAGCACCACTTATGGCAAAGAAAAGATTCGGCCGGGTCTGGGCAAAAGGCACTCAATCTCGTTAGAATTGTTTCAAGTCTTCCTAATGAGAAAGAGACCATTTTTGGAGCATTAGATAAATGGACGGCTTGGGAGACAGAGTTTCCGTTGATTGCAGCAGCTAAGGCCTTGATAATCCTAAGGAAGAGGAGTCAATGGGTGCGCGTAATTCAGTACTTTAGGCGCAACCTGAACCTAATGACCGCCATTATCAAATTGCTTTCTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

182

Amino Acids

20.56

Weight (kDa)

10.41

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	167, 480
AccIII	TCCGGA	1 cut(s)	14
AciI	CCGC	3 cut(s)	167, 266, 519
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	10, 151
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	47, 315
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	10, 187, 234, 351
AhlI	ACTAGT	2 cut(s)	116, 227
AluBI	AGCT	3 cut(s)	80, 99, 437
AluI	AGCT	3 cut(s)	80, 99, 437
Alw21I	GWGCWC	2 cut(s)	200, 282
Alw26I	GTCTC	3 cut(s)	125, 365, 404
Aor13HI	TCCGGA	1 cut(s)	14
AoxI	GGCC	2 cut(s)	306, 441
ApeKI	GCWGC	3 cut(s)	77, 431, 434
ApoI	RAATTY	2 cut(s)	10, 151
AsiGI	ACCGGT	1 cut(s)	238
Asp700I	GAANNNNTTC	2 cut(s)	301, 346
AspLEI	GCGC	2 cut(s)	480, 501
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	455
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	200, 282
BbvI	GCAGC	3 cut(s)	89, 443, 446
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	417
BclI	TGATCA	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	3 cut(s)	125, 365, 404
BcuI	ACTAGT	2 cut(s)	116, 227
BfaI	CTAG	3 cut(s)	117, 228, 540
BisI	GCNGC	3 cut(s)	78, 432, 435
BlsI	GCNGC	3 cut(s)	79, 433, 436
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	310
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	365
BsaWI	WCCGGW	2 cut(s)	14, 238
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 315
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	142
Bse21I	CCTNAGG	1 cut(s)	455
BseAI	TCCGGA	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	47, 315
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	478
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	89, 443, 446
Bsh1236I	CGCG	2 cut(s)	167, 480
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	308, 443
BshTI	ACCGGT	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	200, 282
BsiSI	CCGG	3 cut(s)	15, 239, 309
BslI	CCNNNNNNNGG	2 cut(s)	47, 315
BsmAI	GTCTC	3 cut(s)	125, 365, 404
BsnI	GGCC	2 cut(s)	308, 443
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	200, 282
Bsp13I	TCCGGA	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	3 cut(s)	167, 266, 519
BspANI	GGCC	2 cut(s)	308, 443
BspEI	TCCGGA	1 cut(s)	14
BspFNI	CGCG	2 cut(s)	167, 480
BspLI	GGNNCC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	238
BssMI	GATC	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	455
BstDEI	CTNAG	2 cut(s)	438, 455
BstFNI	CGCG	2 cut(s)	167, 480
BstHHI	GCGC	2 cut(s)	480, 501
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	3 cut(s)	125, 365, 404
BstMBI	GATC	1 cut(s)	55
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	308
BstUI	CGCG	2 cut(s)	167, 480
BstV1I	GCAGC	3 cut(s)	89, 443, 446
BstV2I	GAAGAC	1 cut(s)	347
BstZI	CGGCCG	1 cut(s)	306
Bsu36I	CCTNAGG	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	308, 443
CfoI	GCGC	2 cut(s)	480, 501
Cfr10I	RCCGGY	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	490
CspAI	ACCGGT	1 cut(s)	238
CviJI	RGCY	8 cut(s)	80, 99, 173, 220, 308, 404, 437, 443
CviKI_1	RGCY	8 cut(s)	80, 99, 173, 220, 308, 404, 437, 443
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	2 cut(s)	438, 455
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
DraIII	CACNNNGTG	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	306
EagI	CGGCCG	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
EclXI	CGGCCG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	365
Eco52I	CGGCCG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	455
EcoRI	GAATTC	1 cut(s)	10
FaiI	YATR	1 cut(s)	289
FauI	CCCGC	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	78, 432, 435
Fsp4HI	GCNGC	3 cut(s)	78, 432, 435
FspBI	CTAG	3 cut(s)	117, 228, 540
GlaI	GCGC	2 cut(s)	479, 500
GluI	GCNGC	3 cut(s)	78, 432, 435
HaeIII	GGCC	2 cut(s)	308, 443
HapII	CCGG	3 cut(s)	15, 239, 309
HhaI	GCGC	2 cut(s)	480, 501
Hin6I	GCGC	2 cut(s)	478, 499
HinP1I	GCGC	2 cut(s)	478, 499
HinfI	GANTC	2 cut(s)	302, 466
HpaII	CCGG	3 cut(s)	15, 239, 309
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	15, 259, 540
HpyAV	CCTTC	2 cut(s)	124, 256
HpyCH4V	TGCA	2 cut(s)	111, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	2 cut(s)	438, 455
HspAI	GCGC	2 cut(s)	478, 499
Kpn2I	TCCGGA	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	3 cut(s)	178, 203, 383
LpnPI	CCDG	7 cut(s)	28, 54, 123, 252, 300, 322, 518
Lsp1109I	GCAGC	3 cut(s)	89, 443, 446
MaeI	CTAG	3 cut(s)	117, 228, 540
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	3 cut(s)	259, 347, 472
MhlI	GDGCHC	2 cut(s)	200, 282
MluCI	AATT	7 cut(s)	10, 51, 106, 151, 342, 483, 530
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	2 cut(s)	231, 456
MroI	TCCGGA	1 cut(s)	14
MroXI	GAANNNNTTC	2 cut(s)	301, 346
MspI	CCGG	3 cut(s)	15, 239, 309
MspR9I	CCNGG	1 cut(s)	310
MvnI	CGCG	2 cut(s)	167, 480
MwoI	GCNNNNNNNGC	1 cut(s)	440
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	443
PdmI	GAANNNNTTC	2 cut(s)	301, 346
PfeI	GAWTC	1 cut(s)	302
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	79, 433, 436
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	174
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
SatI	GCNGC	3 cut(s)	78, 432, 435
Sau3AI	GATC	1 cut(s)	55
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	2 cut(s)	200, 282
SetI	ASST	7 cut(s)	73, 82, 101, 135, 439, 507, 513
SpeI	ACTAGT	2 cut(s)	116, 227
Sse9I	AATT	7 cut(s)	10, 51, 106, 151, 342, 483, 530
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	3 cut(s)	167, 266, 519
SspMI	CTAG	3 cut(s)	117, 228, 540
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	308
TaqI	TCGA	1 cut(s)	28
TasI	AATT	7 cut(s)	10, 51, 106, 151, 342, 483, 530
TatI	WGTACW	1 cut(s)	489
TfiI	GAWTC	1 cut(s)	302
TseI	GCWGC	3 cut(s)	77, 431, 434
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	411
XapI	RAATTY	2 cut(s)	10, 151
XbaI	TCTAGA	1 cut(s)	539
XmnI	GAANNNNTTC	2 cut(s)	301, 346
XspI	CTAG	3 cut(s)	117, 228, 540
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.