Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0027833

Physical Location & Seq

Genomic Coordinates Forward (+)

28109715 .. 28110364

Gene Structure 650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCCTTCTGTGGCAAAGTGGATGCTGAGCAAAGGCCAAGGAGCAACAATGGGAACGTATGACACCCTATTGCTGGCATTTGATATGGATCAGAGGGTAGATGAGGCTGAATCATTGTGGAACATGATTCTGCACACGCATACGCGCTCCATCTCTAGGCGGCTGTTTTCTAGGATCGATCTCTTTGTATTCGCAGACATGGAGGAGCTGGGTGTAAGACCAGATGAAGATACTGTCAGGAGAGTGGCACGCGCTTTTCAGGAACTAGGGCAAGAAGAGAACAAAAAACTTTTCTTAAGAAGATATCAGTGTAAATGGAAGTACATTCACTTTAAGGGTGAAAGAGTTAAAGTGAGGAGAACTAATGCATGGAATGAAGATGACAACTTAGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

133

Amino Acids

15.67

Weight (kDa)

8.79

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0027833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33210
pyrus_communis	pycom05g27030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	145, 252
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	2 cut(s)	96, 182
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	73, 156
AflII	CTTAAG	1 cut(s)	295
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
AlwI	GGATC	2 cut(s)	96, 182
AoxI	GGCC	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	147, 254
AsuHPI	GGTGA	1 cut(s)	350
BccI	CCATC	1 cut(s)	158
BfaI	CTAG	3 cut(s)	156, 171, 266
BfrI	CTTAAG	1 cut(s)	295
BisI	GCNGC	1 cut(s)	161
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	162
BmsI	GCATC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 156
Bse8I	GATNNNNATC	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	73, 156
BseMII	CTCAG	1 cut(s)	17
BseRI	GAGGAG	2 cut(s)	218, 370
BseYI	CCCAGC	1 cut(s)	208
BsgI	GTGCAG	1 cut(s)	116
Bsh1236I	CGCG	2 cut(s)	145, 252
BshFI	GGCC	1 cut(s)	36
BshVI	ATCGAT	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	73, 156
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	88, 174, 178
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	18
BspDI	ATCGAT	1 cut(s)	177
BspFNI	CGCG	2 cut(s)	145, 252
BspPI	GGATC	2 cut(s)	96, 182
BspTI	CTTAAG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	3 cut(s)	88, 174, 178
BssT1I	CCWWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	75, 250
BstDEI	CTNAG	2 cut(s)	26, 388
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	2 cut(s)	145, 252
BstHHI	GCGC	2 cut(s)	147, 254
BstKTI	GATC	3 cut(s)	91, 177, 181
BstMBI	GATC	3 cut(s)	88, 174, 178
BstUI	CGCG	2 cut(s)	145, 252
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	75, 250
CfoI	GCGC	2 cut(s)	147, 254
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	124, 199, 369
CviJI	RGCY	4 cut(s)	36, 107, 163, 208
CviKI_1	RGCY	4 cut(s)	36, 107, 163, 208
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	26, 388
DpnI	GATC	3 cut(s)	90, 176, 180
DpnII	GATC	3 cut(s)	88, 174, 178
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	3 cut(s)	127, 202, 372
FaiI	YATR	6 cut(s)	60, 86, 125, 141, 200, 370
FatI	CATG	3 cut(s)	123, 198, 368
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	3 cut(s)	156, 171, 266
GlaI	GCGC	2 cut(s)	146, 253
GluI	GCNGC	1 cut(s)	161
GsaI	CCCAGC	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	36
HhaI	GCGC	2 cut(s)	147, 254
Hin1II	CATG	3 cut(s)	127, 202, 372
Hin6I	GCGC	2 cut(s)	145, 252
HinP1I	GCGC	2 cut(s)	145, 252
HinfI	GANTC	2 cut(s)	110, 127
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	238, 260
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	133, 368
HpyF3I	CTNAG	2 cut(s)	26, 388
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	127, 202, 372
HspAI	GCGC	2 cut(s)	145, 252
Kzo9I	GATC	3 cut(s)	88, 174, 178
LmnI	GCTCC	3 cut(s)	41, 152, 205
LpnPI	CCDG	5 cut(s)	59, 194, 223, 234, 245
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	3 cut(s)	156, 171, 266
MaeII	ACGT	1 cut(s)	56
MalI	GATC	3 cut(s)	90, 176, 180
MboI	GATC	3 cut(s)	88, 174, 178
MboII	GAAGA	4 cut(s)	239, 287, 312, 389
MnlI	CCTC	4 cut(s)	87, 97, 196, 348
Mph1103I	ATGCAT	1 cut(s)	370
MseI	TTAA	3 cut(s)	296, 333, 348
MspCI	CTTAAG	1 cut(s)	295
MvnI	CGCG	2 cut(s)	145, 252
NdeII	GATC	3 cut(s)	88, 174, 178
NlaIII	CATG	3 cut(s)	127, 202, 372
NsiI	ATGCAT	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	110, 127
PkrI	GCNGC	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	296, 333, 348
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	3 cut(s)	88, 174, 178
SetI	ASST	2 cut(s)	59, 210
SfaNI	GCATC	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	3 cut(s)	156, 171, 266
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	177
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	110, 127
Tru1I	TTAA	3 cut(s)	296, 333, 348
Tru9I	TTAA	3 cut(s)	296, 333, 348
TscAI	CASTG	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	240, 390
TspRI	CASTG	1 cut(s)	314
Vha464I	CTTAAG	1 cut(s)	295
XspI	CTAG	3 cut(s)	156, 171, 266
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.