pycom05g27310

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
28321306 .. 28321908
603 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
ATGGCTCACAGAAGAATCCCATTTTGTTTTCTTCTTCTTCTTGTTCTGGTTTTCTGTGAAGGGTTTTTGTCCGTGGCGGCGAAGAATGAGTATGTATCGGCGGTGGGCGATTCGGGAATGAGACGGGACAATCTCCGGTTGGCGATCGAGTCGTGGAATCAGTGCAATGAGGTTGGAGAAGAACCTCCAACTGGCAGCCCAAGAGCTGCTGATTGCTTTGACATATACCAAGCTTCTCCACAGCCGGAAGGTATGTTTAACACTCTTCATATTTATTTATATTTAATAAATAGAAGATTATGCAAGATTAACTCCTCAGCGAAGGTTACAGGATGCAAGCATCGACCCTCGATCCTGAATGGGGTGGGAAGGGAATCATGCTCTTGCAACAAGATGCCGTACGCATTAGTCCACAGAGTCACAGAACGAGACAACAAGTTGAAGATGGGAGAGCATTTTCTTGGTCTGCGGCAAAAGGCTGAGTTCAACGTAGATCGATCTTTACGCGGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.28

Weight (kDa)

8.97

Isoelectric Point (pI)

58.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 32 - 166 1.1e-23 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 507
AciI CCGC 4 cut(s) 77, 101, 469, 507
AclWI GGATC 1 cut(s) 346
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 2 cut(s) 191, 361
AgsI TTSAA 2 cut(s) 442, 487
AluBI AGCT 2 cut(s) 206, 233
AluI AGCT 2 cut(s) 206, 233
Alw26I GTCTC 2 cut(s) 115, 423
AlwI GGATC 1 cut(s) 346
ApeKI GCWGC 2 cut(s) 195, 206
BbvCI CCTCAGC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 193, 207
BccI CCATC 1 cut(s) 439
BceAI ACGGC 1 cut(s) 382
BcoDI GTCTC 2 cut(s) 115, 423
BisI GCNGC 4 cut(s) 78, 196, 207, 470
BlsI GCNGC 4 cut(s) 79, 197, 208, 471
BmsI GCATC 3 cut(s) 323, 349, 384
Bpu10I CCTNAGC 1 cut(s) 316
Bsa29I ATCGAT 1 cut(s) 496
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 361
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 496
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 2 cut(s) 191, 361
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 330, 471
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 2 cut(s) 193, 207
Bsh1236I CGCG 1 cut(s) 507
Bsh1285I CGRYCG 1 cut(s) 147
BshVI ATCGAT 1 cut(s) 496
BsiEI CGRYCG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 136, 245
BsiWI CGTACG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 191, 361
BsmAI GTCTC 2 cut(s) 115, 423
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 140
Bsp143I GATC 4 cut(s) 144, 351, 493, 497
BspACI CCGC 4 cut(s) 77, 101, 469, 507
BspCNI CTCAG 2 cut(s) 329, 472
BspDI ATCGAT 1 cut(s) 496
BspFNI CGCG 1 cut(s) 507
BspPI GGATC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 4 cut(s) 144, 351, 493, 497
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 316, 480
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 338
BstFNI CGCG 1 cut(s) 507
BstKTI GATC 4 cut(s) 147, 354, 496, 500
BstMAI GTCTC 2 cut(s) 115, 423
BstMBI GATC 4 cut(s) 144, 351, 493, 497
BstMCI CGRYCG 1 cut(s) 147
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 2 cut(s) 193, 207
Bsu15I ATCGAT 1 cut(s) 496
BsuTUI ATCGAT 1 cut(s) 496
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 338
ClaI ATCGAT 1 cut(s) 496
Csp6I GTAC 1 cut(s) 400
CviAII CATG 1 cut(s) 378
CviJI RGCY 6 cut(s) 5, 198, 206, 233, 244, 479
CviKI_1 RGCY 6 cut(s) 5, 198, 206, 233, 244, 479
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 2 cut(s) 316, 480
DpnI GATC 4 cut(s) 146, 353, 495, 499
DpnII GATC 4 cut(s) 144, 351, 493, 497
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 381
FaiI YATR 8 cut(s) 93, 224, 226, 254, 270, 280, 301, 379
FaqI GGGAC 1 cut(s) 140
FatI CATG 1 cut(s) 377
Fnu4HI GCNGC 4 cut(s) 78, 196, 207, 470
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 4 cut(s) 78, 196, 207, 470
GluI GCNGC 4 cut(s) 78, 196, 207, 470
HapII CCGG 2 cut(s) 136, 245
Hin1II CATG 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 6 cut(s) 15, 110, 149, 157, 374, 417
HpaII CCGG 2 cut(s) 136, 245
Hpy166II GTNNAC 1 cut(s) 412
Hpy188III TCNNGA 2 cut(s) 114, 355
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 4 cut(s) 53, 242, 316, 363
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 4 cut(s) 165, 303, 336, 387
HpyF3I CTNAG 2 cut(s) 316, 480
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 1 cut(s) 381
Kzo9I GATC 4 cut(s) 144, 351, 493, 497
LpnPI CCDG 6 cut(s) 32, 149, 177, 258, 315, 368
Lsp1109I GCAGC 2 cut(s) 193, 207
LweI GCATC 3 cut(s) 323, 349, 384
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 325, 418
MalI GATC 4 cut(s) 146, 353, 495, 499
MboI GATC 4 cut(s) 144, 351, 493, 497
MboII GAAGA 9 cut(s) 23, 24, 26, 29, 94, 191, 257, 306, 454
MlyI GAGTC 2 cut(s) 158, 426
MmeI TCCRAC 2 cut(s) 154, 212
MnlI CCTC 4 cut(s) 163, 195, 325, 358
MseI TTAA 3 cut(s) 258, 284, 309
MspI CCGG 2 cut(s) 136, 245
MvnI CGCG 1 cut(s) 507
NdeII GATC 4 cut(s) 144, 351, 493, 497
NlaIII CATG 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 418
PfeI GAWTC 4 cut(s) 15, 110, 157, 374
Pfl23II CGTACG 1 cut(s) 399
PkrI GCNGC 4 cut(s) 79, 197, 208, 471
Ple19I CGATCG 1 cut(s) 147
PleI GAGTC 2 cut(s) 157, 425
PpsI GAGTC 2 cut(s) 157, 425
PspLI CGTACG 1 cut(s) 399
PvuI CGATCG 1 cut(s) 147
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SaqAI TTAA 3 cut(s) 258, 284, 309
SatI GCNGC 4 cut(s) 78, 196, 207, 470
Sau3AI GATC 4 cut(s) 144, 351, 493, 497
SchI GAGTC 2 cut(s) 158, 426
SetI ASST 7 cut(s) 174, 187, 208, 235, 253, 327, 492
SfaNI GCATC 3 cut(s) 323, 349, 384
SsiI CCGC 4 cut(s) 77, 101, 469, 507
TaiI ACGT 1 cut(s) 492
TaqI TCGA 4 cut(s) 147, 343, 350, 496
TauI GCSGC 2 cut(s) 80, 472
TfiI GAWTC 4 cut(s) 15, 110, 157, 374
Tru1I TTAA 3 cut(s) 258, 284, 309
Tru9I TTAA 3 cut(s) 258, 284, 309
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 2 cut(s) 195, 206
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.