pycom05g28550

Protein of unknown function, DUF599

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
29216544 .. 29217017
474 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGAATTTTGGAAAGGAGGACCTTGATCTGGTTTTGGTCCCAAGTGGACTGTTCATCATGCTTGTCTATCACATATTCCTCCTCTACAGATACCTCCATCAACCTCACACCACAGTCCTTGGGTTTGAAAACAATGACAAAAGAGCTTGGGCTGAAAGAATTATGCAGGTTGATAAGAGAGATGTTGGCACAGCCTTAAATGTGATCGATCATCCAACACATCAGCAGCAACTTTTTTGTGCTCCATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.76

Weight (kDa)

6.15

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 61 2.6e-12 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw21I GWGCWC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 2 cut(s) 19, 37
AvaII GGWCC 2 cut(s) 19, 37
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 105, 253
BfmI CTRYAG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme18I GGWCC 2 cut(s) 19, 37
BmgT120I GGNCC 2 cut(s) 19, 37
BmiI GGNNCC 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 244
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 25, 204, 208
BspDI ATCGAT 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 3 cut(s) 25, 204, 208
BssT1I CCWWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 51, 115
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 3 cut(s) 28, 207, 211
BstMBI GATC 3 cut(s) 25, 204, 208
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 207
BsuTUI ATCGAT 1 cut(s) 207
BtsCI GGATG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 19, 37
ClaI ATCGAT 1 cut(s) 207
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 1 cut(s) 58
CviJI RGCY 3 cut(s) 146, 152, 194
CviKI_1 RGCY 3 cut(s) 146, 152, 194
DpnI GATC 3 cut(s) 27, 206, 210
DpnII GATC 3 cut(s) 25, 204, 208
Eco130I CCWWGG 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 19, 37
EcoO109I RGGNCCY 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 74, 164
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 227
Hin1II CATG 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 51, 115
HpyCH4V TGCA 1 cut(s) 166
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 3 cut(s) 25, 204, 208
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 2 cut(s) 14, 152
Lsp1109I GCAGC 1 cut(s) 238
MalI GATC 3 cut(s) 27, 206, 210
MboI GATC 3 cut(s) 25, 204, 208
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 2 cut(s) 4, 159
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 5 cut(s) 10, 89, 92, 104, 114
MseI TTAA 1 cut(s) 197
NdeII GATC 3 cut(s) 25, 204, 208
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 228
PpuMI RGGWCCY 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 19, 37
PspPPI RGGWCCY 1 cut(s) 19
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 3 cut(s) 25, 204, 208
Sau96I GGNCC 2 cut(s) 19, 37
SduI GDGCHC 1 cut(s) 244
SetI ASST 5 cut(s) 24, 96, 106, 148, 171
SfcI CTRYAG 1 cut(s) 85
SgeI CNNG 8 cut(s) 35, 41, 54, 70, 74, 131, 159, 179
SinI GGWCC 2 cut(s) 19, 37
Sse9I AATT 2 cut(s) 4, 159
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 51, 115
TaqI TCGA 1 cut(s) 207
TasI AATT 2 cut(s) 4, 159
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 17, 43
VpaK11BI GGWCC 2 cut(s) 19, 37
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.