pycom05g28560

Protein of unknown function, DUF599

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
29217215 .. 29217535
321 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGCCAGATAGTAACATTCCGGCGTGGTACGTGCAGATGGCGGTGATAAGGGGAAGTGATTTCTGGTCACTTGGGCTTAGAGCACTCTATTTTGCTCTTACTCTTTTGCTGTGGTTTTTTGGTCCGATTCCGATGTTTGTTTCCTCCATGGTTTTGGTCATAGTTCTACATAACCTTGACACAAACACCAGACCACTGCATCAGCATCAGCTTCCGGGAAAGGAGCTCGTTAAACACACCGGCGAGAGAATCTCAGAGGTGGCTGTGACCATTCAGCATGATACAGAAACGGTTAAAACTACGACTAGTAGTACAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.93

Weight (kDa)

6.49

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 7 - 64 2.6e-20 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AfaI GTAC 2 cut(s) 29, 313
AhlI ACTAGT 1 cut(s) 305
AluBI AGCT 2 cut(s) 211, 226
AluI AGCT 2 cut(s) 211, 226
Alw21I GWGCWC 2 cut(s) 85, 228
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 2 cut(s) 85, 228
BccI CCATC 1 cut(s) 31
BcnI CCSGG 1 cut(s) 216
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 208, 214
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpuMI CCSGG 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 147
Bse118I RCCGGY 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 267
BsgI GTGCAG 1 cut(s) 53
BsiHKAI GWGCWC 2 cut(s) 85, 228
BsiSI CCGG 3 cut(s) 20, 215, 240
Bsp1286I GDGCHC 2 cut(s) 85, 228
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 292
BstBAI YACGTR 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 77, 253
BstDSI CCRYGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 28, 312
CviAII CATG 2 cut(s) 148, 278
CviJI RGCY 4 cut(s) 76, 211, 226, 263
CviKI_1 RGCY 4 cut(s) 76, 211, 226, 263
CviQI GTAC 2 cut(s) 28, 312
DdeI CTNAG 2 cut(s) 77, 253
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 151, 281
FaiI YATR 4 cut(s) 149, 161, 171, 279
FatI CATG 2 cut(s) 147, 277
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 1 cut(s) 306
HapII CCGG 3 cut(s) 20, 215, 240
Hin1II CATG 2 cut(s) 151, 281
HinfI GANTC 2 cut(s) 127, 249
HpaII CCGG 3 cut(s) 20, 215, 240
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 126, 132, 256
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 34, 199
HpyF3I CTNAG 2 cut(s) 77, 253
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 151, 281
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 6 cut(s) 18, 33, 49, 202, 228, 253
LweI GCATC 2 cut(s) 208, 214
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 3 cut(s) 11, 66, 265
MhlI GDGCHC 2 cut(s) 85, 228
MnlI CCTC 2 cut(s) 154, 250
MseI TTAA 2 cut(s) 231, 294
MspI CCGG 3 cut(s) 20, 215, 240
MspR9I CCNGG 1 cut(s) 216
NciI CCSGG 1 cut(s) 216
NcoI CCATGG 1 cut(s) 147
NlaIII CATG 2 cut(s) 151, 281
NmuCI GTSAC 2 cut(s) 66, 265
PfeI GAWTC 2 cut(s) 127, 249
PfoI TCCNGGA 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 2 cut(s) 29, 313
RsaNI GTAC 2 cut(s) 28, 312
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 231, 294
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 2 cut(s) 85, 228
SetI ASST 5 cut(s) 33, 177, 213, 228, 261
SfaNI GCATC 2 cut(s) 208, 214
SgrAI CRCCGGYG 1 cut(s) 239
SinI GGWCC 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 305
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 306
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 33
TatI WGTACW 1 cut(s) 311
TfiI GAWTC 2 cut(s) 127, 249
Tru1I TTAA 2 cut(s) 231, 294
Tru9I TTAA 2 cut(s) 231, 294
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 2 cut(s) 66, 265
Tsp45I GTSAC 2 cut(s) 66, 265
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 122
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.