pycom05g28720

DEHYDRATION-INDUCED 19-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
29332016 .. 29332506
491 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGGACTCCGAGTTCTGGACCTCCCGCCTCGCCGCCGCCAAACGCCAGTACACGATGCAGCACCACCACCAGAGCTCCCACTTCGATCGGTTAAGCATCGATGATTTCGAGGTAGAAGACGAGGTCCGACCCGACTTCCCGTGCCCGTATTGCTACGAGGACTTCGACATCGCGTCCTTGTGTTCCCACCTCGAGGACGAGCACTCCTGCGAATCTAAAGTCACCGTACGTTCTTACTTATTGTCTTTTTTTTTTTTTGTTCGATTTAGTTTTTGTCGCATCAAGTTTTATGATTTGGTTCCTCCGGAGGACATGGCTATGATCTTTGTCTTTTGTGTCGGCCAAATGTTATTACCCAATTTGGAATTCTGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Di19_C zf-Di19

Protein Analysis

126

Amino Acids

14.93

Weight (kDa)

4.69

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Di19 PF05605 45 - 76 6.2e-11 Drought induced 19 protein (Di19), zinc-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 191
AccII CGCG 1 cut(s) 173
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 3 cut(s) 25, 33, 36
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 2 cut(s) 50, 228
AfiI CCNNNNNNNGG 2 cut(s) 15, 193
AhdI GACNNNNNGTC 1 cut(s) 172
AjuI GAANNNNNNNTTGG 1 cut(s) 350
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw21I GWGCWC 2 cut(s) 77, 204
Ama87I CYCGRG 1 cut(s) 191
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 365
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AspS9I GGNCC 2 cut(s) 18, 124
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 2 cut(s) 18, 124
BaeGI GKGCMC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 77, 204
BbvI GCAGC 1 cut(s) 70
BisI GCNGC 3 cut(s) 33, 36, 59
BlsI GCNGC 3 cut(s) 34, 37, 60
Bme18I GGWCC 2 cut(s) 18, 124
BmeRI GACNNNNNGTC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 18, 124
BmiI GGNNCC 1 cut(s) 300
BmsI GCATC 3 cut(s) 45, 105, 288
BpiI GAAGAC 1 cut(s) 123
Bsa29I ATCGAT 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 193
Bse1I ACTGG 1 cut(s) 46
BseAI TCCGGA 1 cut(s) 304
BseCI ATCGAT 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 15, 193
BseNI ACTGG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 342
BshVI ATCGAT 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 77, 204
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 305
BsiWI CGTACG 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 15, 193
BsnI GGCC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 3 cut(s) 77, 146, 204
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 85, 321
BspACI CCGC 3 cut(s) 25, 33, 36
BspANI GGCC 1 cut(s) 342
BspDI ATCGAT 1 cut(s) 99
BspEI TCCGGA 1 cut(s) 304
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 46
BssMI GATC 2 cut(s) 85, 321
Bst4CI ACNGT 1 cut(s) 226
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 2 cut(s) 88, 324
BstMBI GATC 2 cut(s) 85, 321
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 18, 124
ClaI ATCGAT 1 cut(s) 99
CseI GACGC 1 cut(s) 162
Csp6I GTAC 2 cut(s) 49, 227
CviAII CATG 1 cut(s) 313
CviJI RGCY 3 cut(s) 75, 317, 342
CviKI_1 RGCY 3 cut(s) 75, 317, 342
CviQI GTAC 2 cut(s) 49, 227
DpnI GATC 2 cut(s) 87, 323
DpnII GATC 2 cut(s) 85, 321
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 340
Eam1105I GACNNNNNGTC 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 2 cut(s) 18, 124
Eco53kI GAGCTC 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 365
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 1 cut(s) 316
FaiI YATR 3 cut(s) 291, 314, 320
FatI CATG 1 cut(s) 312
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 3 cut(s) 33, 36, 59
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 33, 36, 59
GluI GCNGC 3 cut(s) 33, 36, 59
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 305
HgaI GACGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 316
HinfI GANTC 2 cut(s) 5, 212
HpaII CCGG 1 cut(s) 305
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 10, 128
Hpy188III TCNNGA 2 cut(s) 16, 305
Hpy8I GTNNAC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 1 cut(s) 316
Kpn2I TCCGGA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 85, 321
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 4 cut(s) 59, 83, 220, 318
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 3 cut(s) 45, 105, 288
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 87, 323
MboI GATC 2 cut(s) 85, 321
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 3 cut(s) 77, 146, 204
MluCI AATT 2 cut(s) 358, 365
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 9 cut(s) 31, 38, 103, 115, 151, 187, 200, 301, 312
MroI TCCGGA 1 cut(s) 304
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 317
MspI CCGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 2 cut(s) 85, 321
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 162
PfeI GAWTC 1 cut(s) 212
Pfl23II CGTACG 1 cut(s) 226
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 3 cut(s) 34, 37, 60
Ple19I CGATCG 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 77
PspLI CGTACG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 2 cut(s) 18, 124
PspXI VCTCGAGB 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 122
PvuI CGATCG 1 cut(s) 88
RsaI GTAC 2 cut(s) 50, 228
RsaNI GTAC 2 cut(s) 49, 227
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 3 cut(s) 33, 36, 59
Sau3AI GATC 2 cut(s) 85, 321
Sau96I GGNCC 2 cut(s) 18, 124
SduI GDGCHC 3 cut(s) 77, 146, 204
SetI ASST 6 cut(s) 23, 77, 114, 126, 192, 232
SfaNI GCATC 3 cut(s) 45, 105, 288
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 2 cut(s) 18, 124
SlaI CTCGAG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 2 cut(s) 358, 365
SsiI CCGC 3 cut(s) 25, 33, 36
SstI GAGCTC 1 cut(s) 77
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 232
TaqI TCGA 6 cut(s) 84, 99, 108, 165, 192, 262
TasI AATT 2 cut(s) 358, 365
TatI WGTACW 1 cut(s) 48
TauI GCSGC 2 cut(s) 35, 38
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 18, 124
XapI RAATTY 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.