Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

29410227 .. 29411334

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGGACAGCTCTGGTTACAAGGAGTACGTTGCGGGCTTGATCGCCGGCGCGGCCACCGTTGGAATCTGTAGGATGCAAATTCAAGGCACAGACTCTGTGGTCCCAATGTCTAGAAGATACGGCAATCCTCTTGATTGTGTCCTTACAACTGTGAAAAATGATGGGGTTAGAGGAATTTTTCGAGGAGGTTTTACAACATTGTTAAGAGAATGTATTGGAAATGCGGTCTTCTTCAGCGTTTATGAGTATGTCCGCTATCACATGCATTTACAATTGAAATCTGCTTCAACTGACCACAGAAACTTGATTGACGTGGGAGTTGGGATTGCTAGCGGTGGCCTTGGTGGTATAGCAGTATGCATCTTCACAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

126

Amino Acids

13.38

Weight (kDa)

8.41

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	8 - 89	3.1e-12	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccII	CGCG	1 cut(s)	53
AciI	CCGC	6 cut(s)	5, 35, 53, 227, 256, 336
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	81, 177
AcuI	CTGAAG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	86, 280, 291
AjiI	CACGTC	1 cut(s)	316
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	54, 340
ApoI	RAATTY	2 cut(s)	81, 177
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	103
AsuNHI	GCTAGC	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	223
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	139
BfaI	CTAG	2 cut(s)	114, 333
BfmI	CTRYAG	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	2 cut(s)	66, 372
BmtI	GCTAGC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	56, 342
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	56, 342
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	6 cut(s)	5, 35, 53, 227, 256, 336
BspANI	GGCC	2 cut(s)	56, 342
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	105
BspOI	GCTAGC	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	61, 154
BstC8I	GCNNGC	3 cut(s)	37, 49, 334
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	56, 342
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	3 cut(s)	37, 49, 334
CaiI	CAGNNNCTG	1 cut(s)	98
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	4 cut(s)	12, 39, 56, 342
CviKI_1	RGCY	4 cut(s)	12, 39, 56, 342
CviQI	GTAC	1 cut(s)	28
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	343
EcoT22I	ATGCAT	2 cut(s)	270, 365
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	1 cut(s)	268
FaiI	YATR	5 cut(s)	246, 252, 266, 353, 361
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	114, 333
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	56, 342
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	2 cut(s)	66, 95
HpaII	CCGG	1 cut(s)	48
Hpy188III	TCNNGA	2 cut(s)	114, 134
HpyCH4III	ACNGT	2 cut(s)	61, 154
HpyCH4IV	ACGT	2 cut(s)	30, 315
HpyCH4V	TGCA	3 cut(s)	79, 268, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	30, 315
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	1 cut(s)	61
LweI	GCATC	2 cut(s)	66, 372
MaeI	CTAG	2 cut(s)	114, 333
MaeII	ACGT	2 cut(s)	30, 315
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	4 cut(s)	129, 223, 226, 358
MfeI	CAATTG	1 cut(s)	275
MluCI	AATT	4 cut(s)	81, 177, 275, 372
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	4 cut(s)	141, 167, 179, 182
Mph1103I	ATGCAT	2 cut(s)	270, 365
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	1 cut(s)	47
MseI	TTAA	2 cut(s)	206, 376
MspI	CCGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	49
NdeII	GATC	1 cut(s)	42
NgoMIV	GCCGGC	1 cut(s)	47
NheI	GCTAGC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	105
NsiI	ATGCAT	2 cut(s)	270, 365
NspI	RCATGY	1 cut(s)	268
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	206, 376
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	89
SetI	ASST	4 cut(s)	14, 33, 193, 318
SfaNI	GCATC	2 cut(s)	66, 372
SfcI	CTRYAG	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	4 cut(s)	81, 177, 275, 372
SsiI	CCGC	6 cut(s)	5, 35, 53, 227, 256, 336
SspMI	CTAG	2 cut(s)	114, 333
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	61, 154
TaiI	ACGT	2 cut(s)	33, 318
TaqI	TCGA	1 cut(s)	184
TasI	AATT	4 cut(s)	81, 177, 275, 372
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	2 cut(s)	206, 376
Tru9I	TTAA	2 cut(s)	206, 376
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	81, 177
XbaI	TCTAGA	1 cut(s)	113
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	2 cut(s)	114, 333
Zsp2I	ATGCAT	2 cut(s)	270, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.