pycom05g28870

Plant protein of unknown function (DUF639)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
29453710 .. 29453892
183 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGGCTGTGGCAAATATGCTCGAGAATTTTGTTAGAGATGGATCCTTCAAATGGTTGCTTGGAGATCGTAGCCCTTATGATGAAGAATTGGAGGATATGGAAAAATCTCCTTCTGCCCAGAAGAATTGGGTTCCAGAGCTATCTCCAATTGCAAACATAGTTGTCCGAAGATGTTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

61

Amino Acids

6.9

Weight (kDa)

4.93

Isoelectric Point (pI)

71.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 36, 49
AcsI RAATTY 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 2 cut(s) 49, 177
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AlwI GGATC 2 cut(s) 36, 49
Ama87I CYCGRG 1 cut(s) 20
ApoI RAATTY 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 20
BamHI GGATCC 1 cut(s) 41
BccI CCATC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 43, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 2 cut(s) 41, 64
BspLI GGNNCC 2 cut(s) 43, 132
BspPI GGATC 2 cut(s) 36, 49
BssMI GATC 2 cut(s) 41, 64
BstKTI GATC 2 cut(s) 44, 67
BstMBI GATC 2 cut(s) 41, 64
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
CviJI RGCY 3 cut(s) 5, 72, 139
CviKI_1 RGCY 3 cut(s) 5, 72, 139
DpnI GATC 2 cut(s) 43, 66
DpnII GATC 2 cut(s) 41, 64
Eco88I CYCGRG 1 cut(s) 20
FaiI YATR 4 cut(s) 17, 78, 98, 158
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 22, 134
HpyAV CCTTC 2 cut(s) 55, 120
HpyCH4V TGCA 1 cut(s) 152
Kzo9I GATC 2 cut(s) 41, 64
LpnPI CCDG 2 cut(s) 131, 147
MalI GATC 2 cut(s) 43, 66
MboI GATC 2 cut(s) 41, 64
MboII GAAGA 3 cut(s) 95, 133, 180
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 41
MluCI AATT 4 cut(s) 25, 86, 124, 147
MnlI CCTC 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 172
MunI CAATTG 1 cut(s) 147
NdeII GATC 2 cut(s) 41, 64
NlaIV GGNNCC 2 cut(s) 43, 132
PaeR7I CTCGAG 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 43, 132
PsuI RGATCY 1 cut(s) 41
Sau3AI GATC 2 cut(s) 41, 64
SetI ASST 1 cut(s) 141
Sfr274I CTCGAG 1 cut(s) 20
SgeI CNNG 5 cut(s) 32, 34, 71, 130, 146
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 4 cut(s) 25, 86, 124, 147
TaqI TCGA 1 cut(s) 21
TasI AATT 4 cut(s) 25, 86, 124, 147
TspDTI ATGAA 1 cut(s) 96
XapI RAATTY 1 cut(s) 25
XhoI CTCGAG 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.