pycom05g29290

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
29759901 .. 29760131
231 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGAAGATCGCATTTCATTTCTGCTGGTGTGACTGCAGTACGTATCCTTTTTCAGATGATTATAAGTTGCTTTCCTCAAAATCAAGTACATCCTCCAATGGAAAGTCAACTTTTGAAGAAAAATCTCTTTCACAGCAGTCTCAAAATTCAGGTTTTTTTTCCCTTCATTGCAACGTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.76

Weight (kDa)

6.68

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 63
AcsI RAATTY 1 cut(s) 145
AfaI GTAC 2 cut(s) 40, 88
AgsI TTSAA 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 144
ApoI RAATTY 1 cut(s) 145
BciVI GTATCC 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 34
BfuI GTATCC 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 166
BseGI GGATG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 166
BssMI GATC 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 42
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 6
BstSFI CTRYAG 1 cut(s) 34
BstSNI TACGTA 1 cut(s) 42
BsuI GTATCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 89
Csp6I GTAC 2 cut(s) 39, 87
CviQI GTAC 2 cut(s) 39, 87
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eco105I TACGTA 1 cut(s) 42
FaiI YATR 1 cut(s) 63
FokI GGATG 1 cut(s) 76
FspEI CC 9 cut(s) 10, 60, 84, 88, 106, 109, 135, 175, 176
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 173
HpyCH4IV ACGT 2 cut(s) 41, 174
HpyCH4V TGCA 2 cut(s) 36, 171
HpySE526I ACGT 2 cut(s) 41, 174
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 2 cut(s) 10, 135
MaeII ACGT 2 cut(s) 41, 174
MaeIII GTNAC 1 cut(s) 29
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 2 cut(s) 16, 128
MluCI AATT 1 cut(s) 145
MnlI CCTC 2 cut(s) 85, 103
MseI TTAA 1 cut(s) 181
NdeII GATC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 42
PsiI TTATAA 1 cut(s) 63
PstI CTGCAG 1 cut(s) 38
RsaI GTAC 2 cut(s) 40, 88
RsaNI GTAC 2 cut(s) 39, 87
SaqAI TTAA 1 cut(s) 181
Sau3AI GATC 1 cut(s) 6
SetI ASST 3 cut(s) 44, 154, 177
SfcI CTRYAG 1 cut(s) 34
SgeI CNNG 3 cut(s) 37, 96, 162
SnaBI TACGTA 1 cut(s) 42
Sse9I AATT 1 cut(s) 145
TaiI ACGT 2 cut(s) 44, 177
TasI AATT 1 cut(s) 145
TatI WGTACW 1 cut(s) 86
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 3 cut(s) 5, 17, 155
XapI RAATTY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.