pycom05g29340
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
29791694 .. 29792926
1233 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGCGTTGCAGCTGCTTTGGTGCTTCGGTTGCTGAGAGGAAAAGGAAATCTGGTTCTGGTCAATTTGGCCATGATCTTGATGAGAATGTGCTGGAAAATATCAAGGCCTTCTCCTACAATGAATTAAGATCCGCGACGGATAATTTCCATCCGAGTAATAAGATCGGGCGAGGCGGTTTTGGAACTGTTTACAAGGGAACCCTGACAAGTGGAAAGCATATTGCTGTCAAGACACTTGCTGCTCAGTCGAAGCAGGGAGTCCGTGAATTCTTAAATGAGATTAACACTATCTCAAATGTCCGGCATCCAAACCTTGTTGAGTTGATTGGGTGCTGTGTTCAGGAAGCTGATCGAGTTTTGGTCTATGAATATGTTGAGAATAAAAGCCTTGATCATGCATTATTAGGTCCAACGAGTAGAACCATCAAACTGGATTGGGAAAAAAGATCAGCCATTTGCTGGGGTACTGCCAGGGGTCTTACGTAG

Protein Analysis

162

Amino Acids

17.8

Weight (kDa)

9.02

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 50 - 160 1.4e-17 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 52 - 160 2.1e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 459
AccII CGCG 1 cut(s) 134
AciI CCGC 2 cut(s) 132, 174
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 1 cut(s) 459
AjnI CCWGG 1 cut(s) 470
AloI GAACNNNNNNTCC 2 cut(s) 37, 69
AluBI AGCT 2 cut(s) 12, 347
AluI AGCT 2 cut(s) 12, 347
AlwI GGATC 1 cut(s) 123
AoxI GGCC 2 cut(s) 67, 105
ApeKI GCWGC 3 cut(s) 9, 12, 239
ApoI RAATTY 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 407
AvaII GGWCC 1 cut(s) 407
BalI TGGCCA 1 cut(s) 69
BbvI GCAGC 2 cut(s) 21, 226
BccI CCATC 2 cut(s) 156, 431
BciT130I CCWGG 1 cut(s) 472
BclI TGATCA 1 cut(s) 391
BisI GCNGC 3 cut(s) 10, 13, 240
BlsI GCNGC 3 cut(s) 11, 14, 241
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 1 cut(s) 313
BsaAI YACGTR 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 471
Bsc4I CCNNNNNNNGG 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 472
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 2 cut(s) 148, 304
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMII CTCAG 2 cut(s) 24, 257
BseNI ACTGG 1 cut(s) 435
BseXI GCAGC 2 cut(s) 21, 226
BseYI CCCAGC 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 2 cut(s) 69, 107
BsiSI CCGG 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 459
BsnI GGCC 2 cut(s) 69, 107
Bsp143I GATC 6 cut(s) 73, 128, 162, 349, 391, 446
BspACI CCGC 2 cut(s) 132, 174
BspANI GGCC 2 cut(s) 69, 107
BspCNI CTCAG 2 cut(s) 25, 256
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 123
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 6 cut(s) 73, 128, 162, 349, 391, 446
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 483
BstDEI CTNAG 2 cut(s) 33, 243
BstF5I GGATG 2 cut(s) 148, 304
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 6 cut(s) 76, 131, 165, 352, 394, 449
BstMBI GATC 6 cut(s) 73, 128, 162, 349, 391, 446
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 470
BstSNI TACGTA 1 cut(s) 483
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 21, 226
BstX2I RGATCY 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 2 cut(s) 69, 107
BtsCI GGATG 2 cut(s) 148, 304
Cfr13I GGNCC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 465
CviAII CATG 2 cut(s) 71, 395
CviJI RGCY 6 cut(s) 12, 69, 107, 347, 387, 452
CviKI_1 RGCY 6 cut(s) 12, 69, 107, 347, 387, 452
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 2 cut(s) 33, 243
DpnI GATC 6 cut(s) 75, 130, 164, 351, 393, 448
DpnII GATC 6 cut(s) 73, 128, 162, 349, 391, 446
EaeI YGGCCR 1 cut(s) 67
Eco105I TACGTA 1 cut(s) 483
Eco147I AGGCCT 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 470
EcoT22I ATGCAT 1 cut(s) 400
FaeI CATG 2 cut(s) 74, 398
FaiI YATR 5 cut(s) 72, 219, 366, 372, 396
FatI CATG 2 cut(s) 70, 394
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 3 cut(s) 10, 13, 240
FokI GGATG 2 cut(s) 135, 291
Fsp4HI GCNGC 3 cut(s) 10, 13, 240
GluI GCNGC 3 cut(s) 10, 13, 240
GsaI CCCAGC 1 cut(s) 463
HaeIII GGCC 2 cut(s) 69, 107
HapII CCGG 1 cut(s) 301
Hin1II CATG 2 cut(s) 74, 398
HinfI GANTC 1 cut(s) 258
HpaII CCGG 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 3 cut(s) 77, 229, 341
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 2 cut(s) 9, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 33, 243
HpySE526I ACGT 1 cut(s) 482
Hsp92II CATG 2 cut(s) 74, 398
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 6 cut(s) 73, 128, 162, 349, 391, 446
Lsp1109I GCAGC 2 cut(s) 21, 226
LweI GCATC 1 cut(s) 313
MaeII ACGT 1 cut(s) 482
MalI GATC 6 cut(s) 75, 130, 164, 351, 393, 448
MboI GATC 6 cut(s) 73, 128, 162, 349, 391, 446
MflI RGATCY 1 cut(s) 128
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 4 cut(s) 62, 122, 142, 266
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 2 cut(s) 30, 164
Mox20I TGGCCA 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 400
MscI TGGCCA 1 cut(s) 69
MseI TTAA 3 cut(s) 125, 272, 282
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 472
MvaI CCWGG 1 cut(s) 472
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 6 cut(s) 73, 128, 162, 349, 391, 446
NlaIII CATG 2 cut(s) 74, 398
NlaIV GGNNCC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 400
PceI AGGCCT 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 459
PkrI GCNGC 3 cut(s) 11, 14, 241
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 470
PspFI CCCAGC 1 cut(s) 459
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 407
PsuI RGATCY 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 12
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
SaqAI TTAA 3 cut(s) 125, 272, 282
SatI GCNGC 3 cut(s) 10, 13, 240
Sau3AI GATC 6 cut(s) 73, 128, 162, 349, 391, 446
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 472
SetI ASST 5 cut(s) 14, 315, 349, 409, 485
SfaNI GCATC 1 cut(s) 313
SinI GGWCC 1 cut(s) 407
SnaBI TACGTA 1 cut(s) 483
Sse9I AATT 4 cut(s) 62, 122, 142, 266
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 2 cut(s) 132, 174
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 470
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 485
TaqI TCGA 2 cut(s) 248, 352
TasI AATT 4 cut(s) 62, 122, 142, 266
Tru1I TTAA 3 cut(s) 125, 272, 282
Tru9I TTAA 3 cut(s) 125, 272, 282
TseI GCWGC 3 cut(s) 9, 12, 239
TspDTI ATGAA 2 cut(s) 135, 381
TspGWI ACGGA 2 cut(s) 152, 251
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.