pycom05g29350
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
29793655 .. 29794214
560 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGGGGGAATTTCCGGAGGAAGAAGTCCTTAGGTACATGAAGGTGGCATTTTTCTGCACCCAAGCAGCAGCAAACCGAAGACCAAAGATGAGCCAGGTTCTTGACATGCTCTCGAGAAACATAAGACTCAACGAGAAACAACTTACAGCCCCAGGTTTCTTCAACAGTTCAGGGAGCCTGAGCGGACCTTCAAGTAAAAAATCATTTTCTGAAACCACTACCAGTCAGATGAGTTCCGTCCCCGACGCTATAACTCAAAGGAGTACAATGGAAGGCAAGAATGTTGGATAA

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

9.36

Isoelectric Point (pI)

76.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 13
AciI CCGC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 2 cut(s) 35, 265
AgsI TTSAA 2 cut(s) 163, 192
AjnI CCWGG 2 cut(s) 93, 151
Ama87I CYCGRG 1 cut(s) 112
Aor13HI TCCGGA 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 65, 68
ApoI RAATTY 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 185
AxyI CCTNAGG 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 77, 80
BciT130I CCWGG 2 cut(s) 95, 153
BisI GCNGC 2 cut(s) 66, 69
BlsI GCNGC 2 cut(s) 67, 70
Bme1390I CCNGG 2 cut(s) 95, 153
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 2 cut(s) 95, 153
BpiI GAAGAC 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 222
Bse21I CCTNAGG 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 2 cut(s) 95, 153
BseDI CCNNGG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 77, 80
BsgI GTGCAG 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 224
BsoBI CYCGRG 1 cut(s) 112
Bsp13I TCCGGA 1 cut(s) 13
BspACI CCGC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 171
BspEI TCCGGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 95, 153
Bst4CI ACNGT 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 29, 179
BstNI CCWGG 2 cut(s) 95, 153
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 93, 151
BstV1I GCAGC 2 cut(s) 77, 80
BstV2I GAAGAC 1 cut(s) 85
Bsu36I CCTNAGG 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 34, 264
CviAII CATG 2 cut(s) 37, 106
CviJI RGCY 3 cut(s) 93, 149, 177
CviKI_1 RGCY 3 cut(s) 93, 149, 177
CviQI GTAC 2 cut(s) 34, 264
DdeI CTNAG 2 cut(s) 29, 179
Eco47I GGWCC 1 cut(s) 185
Eco81I CCTNAGG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 93, 151
FaeI CATG 2 cut(s) 40, 109
FaiI YATR 4 cut(s) 38, 107, 122, 251
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 36, 105
Fnu4HI GCNGC 2 cut(s) 66, 69
Fsp4HI GCNGC 2 cut(s) 66, 69
GluI GCNGC 2 cut(s) 66, 69
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 40, 109
HinfI GANTC 1 cut(s) 126
HpaII CCGG 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 211, 228
Hpy188III TCNNGA 4 cut(s) 14, 101, 112, 114
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 34, 198, 266
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 57
HpyF3I CTNAG 2 cut(s) 29, 179
Hsp92II CATG 2 cut(s) 40, 109
Kpn2I TCCGGA 1 cut(s) 13
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 8 cut(s) 27, 80, 107, 138, 156, 165, 191, 235
Lsp1109I GCAGC 2 cut(s) 77, 80
MbiI CCGCTC 1 cut(s) 183
MboII GAAGA 3 cut(s) 32, 90, 151
MluCI AATT 1 cut(s) 8
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 1 cut(s) 10
MroI TCCGGA 1 cut(s) 13
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 95, 153
MvaI CCWGG 2 cut(s) 95, 153
NlaIII CATG 2 cut(s) 40, 109
NlaIV GGNNCC 1 cut(s) 176
NspI RCATGY 1 cut(s) 109
PaeR7I CTCGAG 1 cut(s) 112
PkrI GCNGC 2 cut(s) 67, 70
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 93, 151
PspGI CCWGG 2 cut(s) 93, 151
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 185
RsaI GTAC 2 cut(s) 35, 265
RsaNI GTAC 2 cut(s) 34, 264
RseI CAYNNNNRTG 1 cut(s) 41
SatI GCNGC 2 cut(s) 66, 69
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 2 cut(s) 95, 153
SetI ASST 5 cut(s) 35, 45, 99, 157, 190
Sfr274I CTCGAG 1 cut(s) 112
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 93, 151
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 113
TasI AATT 1 cut(s) 8
TatI WGTACW 1 cut(s) 263
TseI GCWGC 2 cut(s) 65, 68
TspDTI ATGAA 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.