pycom05g29790

Internal alternative NAD(P)H-ubiquinone oxidoreductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
30159003 .. 30159242
240 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGGATTCAGAAGGTCGCCATCAGGAGCATCTGCGCGCACAACTGAGAAGGATATTTTGTGTGAGCGAGCATCCACACAAGCACCTAGGAAGCATGGCAACAGTTGGAGGCTATAAGGCTTTGGTTGATCTGCGCCAGTCTAAGGTAGATTTTCTTTGCCTTTATGCTGAAGGGCAATGTGCTTTTCCGCCGAGCACTTTCAAAGTACTTTTCTACCAAGCATTTTCCTTAACCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

9.0

Weight (kDa)

8.44

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 36
AciI CCGC 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 202
Alw21I GWGCWC 1 cut(s) 197
AspA2I CCTAGG 1 cut(s) 85
AspLEI GCGC 3 cut(s) 36, 38, 135
AvrII CCTAGG 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 197
BccI CCATC 1 cut(s) 27
BfaI CTAG 1 cut(s) 86
BlnI CCTAGG 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 207
BmsI GCATC 2 cut(s) 37, 79
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 136
BsePI GCGCGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 182
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 85
BssHII GCGCGC 1 cut(s) 34
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 36, 68
BstDEI CTNAG 2 cut(s) 44, 141
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 3 cut(s) 36, 38, 135
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstUI CGCG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 36, 68
CfoI GCGC 3 cut(s) 36, 38, 135
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 94
CviJI RGCY 2 cut(s) 111, 119
CviKI_1 RGCY 2 cut(s) 111, 119
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 44, 141
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 95, 114, 165
FatI CATG 1 cut(s) 93
FokI GGATG 1 cut(s) 57
FspBI CTAG 1 cut(s) 86
GlaI GCGC 3 cut(s) 35, 37, 134
HhaI GCGC 3 cut(s) 36, 38, 135
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 3 cut(s) 34, 36, 133
HinP1I GCGC 3 cut(s) 34, 36, 133
HinfI GANTC 1 cut(s) 5
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 5, 42, 164
HpyCH4III ACNGT 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 44, 141
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 3 cut(s) 34, 36, 133
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 2 cut(s) 8, 149
LweI GCATC 2 cut(s) 37, 79
MaeI CTAG 1 cut(s) 86
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 1 cut(s) 101
MseI TTAA 1 cut(s) 230
MvnI CGCG 1 cut(s) 36
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 97
NmeAIII GCCGAG 1 cut(s) 216
PauI GCGCGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 5
PteI GCGCGC 1 cut(s) 34
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 230
Sau3AI GATC 1 cut(s) 127
ScaI AGTACT 1 cut(s) 207
SduI GDGCHC 1 cut(s) 197
SetI ASST 4 cut(s) 16, 87, 147, 236
SfaNI GCATC 2 cut(s) 37, 79
SgeI CNNG 9 cut(s) 35, 47, 79, 91, 98, 106, 148, 204, 230
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 103
TatI WGTACW 1 cut(s) 205
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
XmaJI CCTAGG 1 cut(s) 85
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.