pycom05g30140

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
30359856 .. 30360551
696 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGAGCACAGGAAAGCAGCTTCTTTATCAGCACAGAATGCGAAGCTTCTCCTTTTCATCATCATTATTACTCTCTTCAAATTTCTGCTCCAACGTCCTCTCCTTGACCTCCTCATTCACTCCTCACAACCTACAAACACAAACAACTTCTTCACTAATTCAAAACCAAATCAATCAAAAAGCAGAAATGGATTATGAGTTTGATCTTCAAGTACACAACTCCGATGCAATCCCAGATCTATTTGCCTCAGAAACTGACCACATGCCCTCCCAAAACTTCCCAAGCAGCTCAAAACACACCGGTTTCTACTATACTTTTCGCCTCGAAGCCATTTCTATGTTTTTGCAGGGAGCGGATAATAACTTTTTTGGAGTTCAGGATGGCTTTGTGTTTCTACTAGTAATCTACTTCTTCAGATTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.14

Weight (kDa)

5.59

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 353
AciI CCGC 1 cut(s) 353
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 397
AfaI GTAC 1 cut(s) 213
AgeI ACCGGT 1 cut(s) 299
AgsI TTSAA 3 cut(s) 78, 161, 209
AhlI ACTAGT 1 cut(s) 397
AluBI AGCT 3 cut(s) 19, 45, 288
AluI AGCT 3 cut(s) 19, 45, 288
Alw21I GWGCWC 1 cut(s) 8
AlwNI CAGNNNCTG 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 16, 285
ApoI RAATTY 1 cut(s) 79
AsiGI ACCGGT 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 28, 297
BccI CCATC 1 cut(s) 374
BcuI ACTAGT 1 cut(s) 397
BfaI CTAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 235
BisI GCNGC 2 cut(s) 17, 286
BlsI GCNGC 2 cut(s) 18, 287
BmsI GCATC 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 299
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 251, 281
Bse118I RCCGGY 1 cut(s) 299
BseGI GGATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 261
BseRI GAGGAG 2 cut(s) 100, 111
BseXI GCAGC 2 cut(s) 28, 297
BshTI ACCGGT 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 300
BsmI GAATGC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 202, 235
BspACI CCGC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 299
BssMI GATC 2 cut(s) 202, 235
Bst6I CTCTTC 1 cut(s) 79
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 2 cut(s) 205, 238
BstMBI GATC 2 cut(s) 202, 235
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 28, 297
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BtsCI GGATG 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 299
Csp6I GTAC 1 cut(s) 212
CspAI ACCGGT 1 cut(s) 299
CviAII CATG 1 cut(s) 262
CviJI RGCY 5 cut(s) 19, 45, 288, 329, 384
CviKI_1 RGCY 5 cut(s) 19, 45, 288, 329, 384
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 247
DpnI GATC 2 cut(s) 204, 237
DpnII GATC 2 cut(s) 202, 235
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 397
FaeI CATG 1 cut(s) 265
FaiI YATR 4 cut(s) 195, 263, 312, 338
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 17, 286
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 17, 286
FspBI CTAG 1 cut(s) 398
GluI GCNGC 2 cut(s) 17, 286
HapII CCGG 1 cut(s) 300
Hin1II CATG 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 43
HpaII CCGG 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 223, 250, 416
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 227, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 2 cut(s) 202, 235
LmnI GCTCC 2 cut(s) 92, 350
LpnPI CCDG 4 cut(s) 246, 313, 332, 362
Lsp1109I GCAGC 2 cut(s) 28, 297
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 398
MaeII ACGT 1 cut(s) 93
MalI GATC 2 cut(s) 204, 237
MbiI CCGCTC 1 cut(s) 353
MboI GATC 2 cut(s) 202, 235
MboII GAAGA 4 cut(s) 66, 141, 197, 403
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 79, 156
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 7 cut(s) 107, 118, 121, 132, 256, 277, 332
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 2 cut(s) 202, 235
NlaIII CATG 1 cut(s) 265
NspI RCATGY 1 cut(s) 265
PctI GAATGC 1 cut(s) 42
PinAI ACCGGT 1 cut(s) 299
PkrI GCNGC 2 cut(s) 18, 287
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 335
SatI GCNGC 2 cut(s) 17, 286
Sau3AI GATC 2 cut(s) 202, 235
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 21, 47, 96, 110, 132, 290
SfaNI GCATC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 397
Sse9I AATT 2 cut(s) 79, 156
SsiI CCGC 1 cut(s) 353
SspMI CTAG 1 cut(s) 398
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 324
TasI AATT 2 cut(s) 79, 156
TatI WGTACW 1 cut(s) 211
TseI GCWGC 2 cut(s) 16, 285
TspDTI ATGAA 1 cut(s) 45
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 265
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.