pycom05g30150

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
30361675 .. 30361920
246 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGGTAATAAGTGAAAGGTTGGATACTATGTCCTGCCCAAGAACCCCAGTGAGCGTTCTGGAAAGGCGCCTCACTAGATCGGAAGGCGAGAAGACCATCAGCACCGCCGCCAACAGCACCAGCACCACGACATATACTTCTGTTTCTATGGCAGCAGAGAAGAGACACAGCAAAAGGCGTAGATTAAATGGTACTTTTTGCAGTGAAAATATGTTCAAGCTTTCTCATCATGTTCAACAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.17

Weight (kDa)

9.91

Isoelectric Point (pI)

62.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 66
AciI CCGC 2 cut(s) 105, 108
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 1 cut(s) 193
AgsI TTSAA 2 cut(s) 217, 236
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 69
BanI GGYRCC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 104
BciVI GTATCC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 70
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 2 cut(s) 108, 153
BlsI GCNGC 2 cut(s) 109, 154
BmiI GGNNCC 1 cut(s) 68
BmrI ACTGGG 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 2 cut(s) 105, 108
BspLI GGNNCC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 47
BssMI GATC 1 cut(s) 77
BssNI GRCGYC 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 98
BsuI GTATCC 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 3 cut(s) 54, 208, 245
CfoI GCGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 192
CviAII CATG 1 cut(s) 230
CviJI RGCY 1 cut(s) 220
CviKI_1 RGCY 1 cut(s) 220
CviQI GTAC 1 cut(s) 192
DinI GGCGCC 1 cut(s) 68
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EgeI GGCGCC 1 cut(s) 68
EheI GGCGCC 1 cut(s) 68
FaeI CATG 1 cut(s) 233
FaiI YATR 6 cut(s) 29, 133, 135, 149, 212, 231
FatI CATG 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 108, 153
Fsp4HI GCNGC 2 cut(s) 108, 153
FspBI CTAG 1 cut(s) 75
GlaI GCGC 1 cut(s) 68
GluI GCNGC 2 cut(s) 108, 153
HaeII RGCGCY 1 cut(s) 70
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 1 cut(s) 233
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 1 cut(s) 233
HspAI GCGC 1 cut(s) 67
KasI GGCGCC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 77
LpnPI CCDG 4 cut(s) 44, 46, 60, 133
Lsp1109I GCAGC 1 cut(s) 164
MaeI CTAG 1 cut(s) 75
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 2 cut(s) 103, 172
Mly113I GGCGCC 1 cut(s) 67
MnlI CCTC 1 cut(s) 80
MseI TTAA 1 cut(s) 185
NarI GGCGCC 1 cut(s) 67
NdeII GATC 1 cut(s) 77
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 109, 154
PluTI GGCGCC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 68
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 108, 153
Sau3AI GATC 1 cut(s) 77
SetI ASST 2 cut(s) 20, 222
SfoI GGCGCC 1 cut(s) 68
SsiI CCGC 2 cut(s) 105, 108
SspDI GGCGCC 1 cut(s) 66
SspMI CTAG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 240
TauI GCSGC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 3 cut(s) 54, 208, 245
TseI GCWGC 1 cut(s) 152
TspRI CASTG 3 cut(s) 54, 208, 245
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.