pycom05g30750

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
30746142 .. 30746435
294 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
ATGATTTCTCCAGTACACAGGATTACATTGTTGTGTTTATTTTCTTTTTTCTTTGTCGTTCGATTGGAATTACATGGTCTGGCCTTAAAGAATTTTGTTGCGCTTCTTTCTTTGAAGAGAAGTTTGAGCAATTATGAATTCACTACCGATGAGAATTTGGTTAGATTCAAGTGTGCGTGCAAGCAATGGTGTTTGTTAATTGGTCAGGACAATGAGTTCATCACGAAACATCAGAGCCAGTCTGCCAGACGAATTAAGAGTGCCTTCCTACCGATGAGAATTTCAACATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

98

Amino Acids

11.29

Weight (kDa)

9.76

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 91, 137, 154, 279
AfaI GTAC 1 cut(s) 15
AgsI TTSAA 3 cut(s) 115, 169, 285
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AoxI GGCC 1 cut(s) 81
ApoI RAATTY 4 cut(s) 91, 137, 154, 279
AspLEI GCGC 1 cut(s) 103
Bse1I ACTGG 2 cut(s) 11, 238
Bse3DI GCAATG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 11, 238
BshFI GGCC 1 cut(s) 83
BsnI GGCC 1 cut(s) 83
BspANI GGCC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 191
BsrI ACTGG 2 cut(s) 11, 238
Bst6I CTCTTC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 178, 182
BstHHI GCGC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 178, 182
CfoI GCGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 14
CviAII CATG 1 cut(s) 74
CviJI RGCY 2 cut(s) 83, 237
CviKI_1 RGCY 2 cut(s) 83, 237
CviQI GTAC 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 137
FaeI CATG 1 cut(s) 77
FaiI YATR 2 cut(s) 75, 135
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 1 cut(s) 73
GlaI GCGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 83
HhaI GCGC 1 cut(s) 103
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 206, 223
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 180
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 1 cut(s) 101
LpnPI CCDG 6 cut(s) 4, 24, 65, 191, 251, 259
MboII GAAGA 1 cut(s) 127
MluCI AATT 8 cut(s) 68, 91, 130, 137, 154, 198, 252, 279
MseI TTAA 3 cut(s) 86, 197, 255
MslI CAYNNNNRTG 1 cut(s) 31
NlaIII CATG 1 cut(s) 77
PfeI GAWTC 1 cut(s) 165
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 31
SaqAI TTAA 3 cut(s) 86, 197, 255
SmiMI CAYNNNNRTG 1 cut(s) 31
Sse9I AATT 8 cut(s) 68, 91, 130, 137, 154, 198, 252, 279
TaqI TCGA 1 cut(s) 61
TasI AATT 8 cut(s) 68, 91, 130, 137, 154, 198, 252, 279
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 3 cut(s) 86, 197, 255
Tru9I TTAA 3 cut(s) 86, 197, 255
TspDTI ATGAA 2 cut(s) 150, 208
XapI RAATTY 4 cut(s) 91, 137, 154, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.