pycom05g31980

UBA and UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
31516675 .. 31516923
249 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGGGGTTCCCTCCCAAGCTCCTCAATGATCCGAGTCAAACAATTGAGCAGGCAGGCCTCGCCAATTCGGTTCTGCACTTGCACAAGATCGATCCAGAAATTATAGCCGGCTGGACCATGACATTTGCTGTTTGTCTGTTAGCAATATATGTACCAGGTATTAAAAACTGGAACCTTTACTGTTTAATCCATATGTACATTGTATTTCAAGATGTGGGTCTGACTGTAAAATACGTTTGGAAACTATAA

Protein Analysis

83

Amino Acids

9.32

Weight (kDa)

6.8

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 23, 86
AfaI GTAC 2 cut(s) 153, 197
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AlwI GGATC 2 cut(s) 23, 86
AoxI GGCC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 114
AvaII GGWCC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 2 cut(s) 8, 173
BmrFI CCNGG 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 90
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 90
BsiSI CCGG 1 cut(s) 108
BsnI GGCC 1 cut(s) 57
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 3 cut(s) 28, 87, 91
BspANI GGCC 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 8, 173
BspPI GGATC 2 cut(s) 23, 86
BsrFI RCCGGY 1 cut(s) 107
BsrGI TGTACA 1 cut(s) 195
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 107
BssMI GATC 3 cut(s) 28, 87, 91
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 182, 226
BstAUI TGTACA 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 51, 55, 109
BstKTI GATC 3 cut(s) 31, 90, 94
BstMBI GATC 3 cut(s) 28, 87, 91
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 90
BsuRI GGCC 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 90
Cac8I GCNNGC 3 cut(s) 51, 55, 109
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 114
ClaI ATCGAT 1 cut(s) 90
CsiI ACCWGGT 1 cut(s) 154
Csp6I GTAC 2 cut(s) 152, 196
CviAII CATG 1 cut(s) 118
CviJI RGCY 4 cut(s) 19, 57, 107, 111
CviKI_1 RGCY 4 cut(s) 19, 57, 107, 111
CviQI GTAC 2 cut(s) 152, 196
DpnI GATC 3 cut(s) 30, 89, 93
DpnII GATC 3 cut(s) 28, 87, 91
Eco147I AGGCCT 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 154
FaeI CATG 1 cut(s) 121
FaiI YATR 7 cut(s) 104, 119, 148, 150, 192, 194, 247
FatI CATG 1 cut(s) 117
FauNDI CATATG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 108
Hin1II CATG 1 cut(s) 121
HinfI GANTC 1 cut(s) 34
HpaII CCGG 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 33, 222
Hpy188III TCNNGA 2 cut(s) 95, 209
HpyCH4III ACNGT 2 cut(s) 182, 226
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 76, 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 1 cut(s) 121
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 28, 87, 91
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 8 cut(s) 35, 39, 97, 108, 121, 141, 154, 168
MabI ACCWGGT 1 cut(s) 154
MaeII ACGT 1 cut(s) 234
MalI GATC 3 cut(s) 30, 89, 93
MboI GATC 3 cut(s) 28, 87, 91
MfeI CAATTG 1 cut(s) 42
MluCI AATT 3 cut(s) 42, 64, 99
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 3 cut(s) 21, 32, 68
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 2 cut(s) 162, 185
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 109
NdeI CATATG 1 cut(s) 192
NdeII GATC 3 cut(s) 28, 87, 91
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 2 cut(s) 8, 173
PceI AGGCCT 1 cut(s) 57
PdiI GCCGGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 8, 173
PspPI GGNCC 1 cut(s) 114
RsaI GTAC 2 cut(s) 153, 197
RsaNI GTAC 2 cut(s) 152, 196
SaqAI TTAA 2 cut(s) 162, 185
Sau3AI GATC 3 cut(s) 28, 87, 91
Sau96I GGNCC 1 cut(s) 114
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 156
SetI ASST 4 cut(s) 21, 160, 177, 237
SexAI ACCWGGT 1 cut(s) 154
SinI GGWCC 1 cut(s) 114
Sse9I AATT 3 cut(s) 42, 64, 99
SseBI AGGCCT 1 cut(s) 57
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 154
TaaI ACNGT 2 cut(s) 182, 226
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 90
TasI AATT 3 cut(s) 42, 64, 99
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 2 cut(s) 162, 185
Tru9I TTAA 2 cut(s) 162, 185
VpaK11BI GGWCC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.