Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

31681146 .. 31683156

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCATTTTTCACCACTCCCTCCCTCCCGTTTGAAGTCTCTGCAACAACACCGCAGAATGGCAGCGGCGACTCTGTCTTCGCCGGTGTTTGCAATCTCCGCCTCCTCCTCTTCTTCTTCTTCTTCGTCTCTCAGAGCAAGGAGGAGCTTCAAGACTTCAGCTTTTTCATCCCGGAATCGTTTTCCATACAATCCCATTTCCGCTCGTCCGTCGATTTCCAGTGTGAACAATCCTTCAACATCTTCCTTACGACAGTCATAAAGGTACTTGATACTGTGTACTGCAACCGAGATTGTGCAAGGTTCTTTGTACTGCAAACTATTGCAAGGGTTCCTTACTTCGCTTTTATGTCTGTTCTGCACATATATGAAAGTTTGGGTTGGTGGAGAAGGGCAGATTATCTGAAGGTGCATTTTGCTGAGAGCTGGAATGAGATGCACTATCTGCTTATCATGGAAGAATTGGGGGGAAATGCTTGGTGGTTTGACCGCTTTCTTGCTCAGCACATTGCAGTCTTCTATTATTCTATGACAGCCTTTATGTATAAGCCCAAGGATGGCTTATCGCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0006720 GO:0006721 GO:0006996 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009579 GO:0009657 GO:0009916 GO:0009987 GO:0016043 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016679 GO:0016682 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

192

Amino Acids

22.46

Weight (kDa)

5.46

Isoelectric Point (pI)

58.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AOX	PF01786	94 - 182	1.1e-14	Alternative oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	204
AciI	CCGC	5 cut(s)	53, 66, 100, 202, 490
AcuI	CTGAAG	2 cut(s)	142, 425
AfaI	GTAC	3 cut(s)	267, 281, 312
AfiI	CCNNNNNNNGG	2 cut(s)	59, 557
AgsI	TTSAA	3 cut(s)	35, 152, 238
AluBI	AGCT	3 cut(s)	148, 162, 426
AluI	AGCT	3 cut(s)	148, 162, 426
Alw26I	GTCTC	2 cut(s)	43, 133
ApeKI	GCWGC	1 cut(s)	63
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	70, 508
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	551
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	43, 133
BisI	GCNGC	2 cut(s)	64, 67
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	2 cut(s)	65, 68
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	426
BpiI	GAAGAC	2 cut(s)	70, 508
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 557
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	2 cut(s)	168, 562
BseLI	CCNNNNNNNGG	2 cut(s)	59, 557
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	3 cut(s)	146, 411, 515
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	3 cut(s)	95, 98, 158
BseXI	GCAGC	1 cut(s)	75
BsgI	GTGCAG	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	84, 173
BslI	CCNNNNNNNGG	2 cut(s)	59, 557
BsmAI	GTCTC	2 cut(s)	43, 133
BsmBI	CGTCTC	1 cut(s)	133
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	5 cut(s)	53, 66, 100, 202, 490
BspCNI	CTCAG	3 cut(s)	145, 412, 514
BspLI	GGNNCC	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	552
Bst4CI	ACNGT	2 cut(s)	256, 277
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstDEI	CTNAG	3 cut(s)	132, 420, 501
BstF5I	GGATG	2 cut(s)	168, 562
BstMAI	GTCTC	2 cut(s)	43, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 445
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	2 cut(s)	70, 508
BtsCI	GGATG	2 cut(s)	168, 562
BtsIMutI	CAGTG	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	266, 280, 311
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	6 cut(s)	148, 162, 426, 536, 550, 561
CviKI_1	RGCY	6 cut(s)	148, 162, 426, 536, 550, 561
CviQI	GTAC	3 cut(s)	266, 280, 311
DdeI	CTNAG	3 cut(s)	132, 420, 501
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	552
Eco57I	CTGAAG	2 cut(s)	142, 425
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	1 cut(s)	457
FalI	AAGNNNNNCTT	3 cut(s)	319, 351, 545
FatI	CATG	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	64, 67
FokI	GGATG	2 cut(s)	155, 569
Fsp4HI	GCNGC	2 cut(s)	64, 67
GluI	GCNGC	2 cut(s)	64, 67
HapII	CCGG	2 cut(s)	84, 173
Hin1II	CATG	1 cut(s)	457
HinfI	GANTC	2 cut(s)	71, 176
HpaII	CCGG	2 cut(s)	84, 173
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	227, 280
Hpy188I	TCNGA	3 cut(s)	135, 405, 575
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	2 cut(s)	227, 280
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	244, 384, 400
HpyCH4III	ACNGT	2 cut(s)	256, 277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 445
HpyF3I	CTNAG	3 cut(s)	132, 420, 501
Hsp92II	CATG	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	4 cut(s)	97, 186, 233, 412
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	426
MbiI	CCGCTC	1 cut(s)	204
MboII	GAAGA	9 cut(s)	70, 103, 106, 109, 112, 115, 235, 470, 508
MluCI	AATT	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	31, 35, 113, 116, 119, 136
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	2 cut(s)	84, 173
MspR9I	CCNGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	99, 445
NciI	CCSGG	1 cut(s)	173
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	65, 68
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	333
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	3 cut(s)	267, 281, 312
RsaNI	GTAC	3 cut(s)	266, 280, 311
RseI	CAYNNNNRTG	1 cut(s)	366
SatI	GCNGC	2 cut(s)	64, 67
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	6 cut(s)	150, 164, 267, 305, 411, 428
SfaNI	GCATC	1 cut(s)	426
SgrAI	CRCCGGYG	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	1 cut(s)	461
SsiI	CCGC	5 cut(s)	53, 66, 100, 202, 490
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	2 cut(s)	256, 277
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	461
TatI	WGTACW	2 cut(s)	279, 310
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	176
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	157, 384
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	227
Tth111I	GACNNNGTC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.