Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

31723885 .. 31724963

Gene Structure 1079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGACGTCATGTTTCCATGCGCTCCGTCTGCGAAAGTCGAAGAGCAAACCTTTGCCAAACCCTTCCTCGTCAAAGAATCCCCAGTTCAATTCCGAAATTAACAGCATGGAAAGGAAGAGGTTTGACAGCTTGGATTCATGGTCTATGATACTGGATTCAGAAAATGTGGAAACTTGGGAGGTTTCAAAGGAGGACCAGGAGTGGACGGCTGATCGTTCTCCGGTGTTTATTGGTAACAAGTTTGCGTCTGGTGCGCACAGTAGGATTTATCGTGGAATCTACAAGCAGAGAGCTGTTGCTGTGAAAATGGTGAGGATTCCAAACCAGAAGGAGGAGACCAGAAGCGTACTTGAGCAGCAATTCAAGTCCGAAGTTGCCCTGCTTTCGCGCCTCTTTCATCCCAACATAGTGCAGTTTATTGCAGCTTGTAAAAAGCCTCCTGTGTACTGTATAATCACAGAATATATGTCACAAGGAACATTGAGGATGTATCTCAACAAGAAAGAGCCATATTCTCTGTCCACAGAAACAATTCTGAGGTTAGCTCTCGACATATCCCGTGGAATGGAGTATCTTCATTCGCAAGGGGTGATCCACAGGGACCTCAAATCAAATAACTTGCTTCTGAATGATGATATGAGAGTTAAGGTGGCGGATTTTGGTACATCGTGTCTTGAAACACAGTGCCGGGAAACCAAGGGAAACAAGGGGACTTATCGTTGGATGGCACCAGAGATCGATCAAGGAGAAACCTTATTCCCGGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

258

Amino Acids

29.57

Weight (kDa)

9.01

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	79 - 247	9.4e-40	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	84 - 247	3.5e-38	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	11
Acc16I	TGCGCA	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	730
AccII	CGCG	1 cut(s)	391
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	1 cut(s)	589
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	3 cut(s)	351, 449, 667
AfiI	CCNNNNNNNGG	2 cut(s)	334, 568
AgsI	TTSAA	4 cut(s)	91, 189, 367, 680
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	4 cut(s)	132, 296, 428, 548
AluI	AGCT	4 cut(s)	132, 296, 428, 548
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	589
ApeKI	GCWGC	2 cut(s)	358, 425
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	3 cut(s)	25, 259, 393
AspS9I	GGNCC	2 cut(s)	196, 604
AsuC2I	CCSGG	2 cut(s)	692, 764
AsuHPI	GGTGA	2 cut(s)	325, 604
AvaII	GGWCC	2 cut(s)	196, 604
BanI	GGYRCC	1 cut(s)	730
BbvI	GCAGC	2 cut(s)	370, 437
BccI	CCATC	1 cut(s)	721
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	2 cut(s)	692, 764
BcoDI	GTCTC	1 cut(s)	332
BisI	GCNGC	2 cut(s)	359, 426
BlsI	GCNGC	2 cut(s)	360, 427
Bme1390I	CCNGG	3 cut(s)	200, 692, 764
Bme18I	GGWCC	2 cut(s)	196, 604
BmgT120I	GGNCC	2 cut(s)	196, 604
BmiI	GGNNCC	2 cut(s)	605, 732
BmrFI	CCNGG	3 cut(s)	200, 692, 764
BmrI	ACTGGG	1 cut(s)	79
BmuI	ACTGGG	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	2 cut(s)	692, 764
Bsa29I	ATCGAT	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	562, 699
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 568
Bse1I	ACTGG	2 cut(s)	85, 159
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	562, 699
BseGI	GGATG	3 cut(s)	400, 495, 732
BseLI	CCNNNNNNNGG	2 cut(s)	334, 568
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	2 cut(s)	85, 159
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	2 cut(s)	370, 437
BsgI	GTGCAG	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	741
BsiSI	CCGG	3 cut(s)	224, 691, 764
BslFI	GGGAC	2 cut(s)	617, 727
BslI	CCNNNNNNNGG	2 cut(s)	334, 568
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	617, 727
Bso31I	GGTCTC	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	214, 594, 738, 742
BspACI	CCGC	1 cut(s)	656
BspCNI	CTCAG	1 cut(s)	531
BspDI	ATCGAT	1 cut(s)	741
BspFNI	CGCG	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	605, 732
BspPI	GGATC	1 cut(s)	589
BspQI	GCTCTTC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	730
BspTNI	GGTCTC	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	85, 159
BssECI	CCNNGG	2 cut(s)	562, 699
BssMI	GATC	4 cut(s)	214, 594, 738, 742
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	699
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	3 cut(s)	263, 452, 687
Bst6I	CTCTTC	2 cut(s)	38, 113
BstACI	GRCGYC	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	539
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	3 cut(s)	400, 495, 732
BstFNI	CGCG	1 cut(s)	391
BstHHI	GCGC	3 cut(s)	25, 259, 393
BstKTI	GATC	4 cut(s)	217, 597, 741, 745
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	4 cut(s)	214, 594, 738, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 254
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	3 cut(s)	198, 690, 762
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	370, 437
Bsu15I	ATCGAT	1 cut(s)	741
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	3 cut(s)	400, 495, 732
BtsIMutI	CAGTG	1 cut(s)	692
CfoI	GCGC	3 cut(s)	25, 259, 393
Cfr13I	GGNCC	2 cut(s)	196, 604
ClaI	ATCGAT	1 cut(s)	741
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	3 cut(s)	350, 448, 666
CviAII	CATG	4 cut(s)	12, 20, 109, 141
CviJI	RGCY	7 cut(s)	132, 212, 296, 428, 439, 511, 548
CviKI_1	RGCY	7 cut(s)	132, 212, 296, 428, 439, 511, 548
CviQI	GTAC	3 cut(s)	350, 448, 666
DdeI	CTNAG	1 cut(s)	539
DpnI	GATC	4 cut(s)	216, 596, 740, 744
DpnII	GATC	4 cut(s)	214, 594, 738, 742
Eam1104I	CTCTTC	2 cut(s)	38, 113
EarI	CTCTTC	2 cut(s)	38, 113
EciI	GGCGGA	1 cut(s)	671
Eco130I	CCWWGG	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	196, 604
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	699
FaeI	CATG	4 cut(s)	15, 23, 112, 144
FaqI	GGGAC	2 cut(s)	617, 727
FatI	CATG	4 cut(s)	11, 19, 108, 140
Fnu4HI	GCNGC	2 cut(s)	359, 426
FokI	GGATG	3 cut(s)	387, 502, 739
Fsp4HI	GCNGC	2 cut(s)	359, 426
FspAI	RTGCGCAY	1 cut(s)	258
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	3 cut(s)	24, 258, 392
GluI	GCNGC	2 cut(s)	359, 426
HapII	CCGG	3 cut(s)	224, 691, 764
HgaI	GACGC	1 cut(s)	237
HhaI	GCGC	3 cut(s)	25, 259, 393
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	4 cut(s)	15, 23, 112, 144
Hin6I	GCGC	3 cut(s)	23, 257, 391
HinP1I	GCGC	3 cut(s)	23, 257, 391
HinfI	GANTC	5 cut(s)	79, 137, 158, 279, 319
HpaII	CCGG	3 cut(s)	224, 691, 764
HphI	GGTGA	2 cut(s)	325, 604
Hpy166II	GTNNAC	3 cut(s)	207, 448, 525
Hpy188I	TCNGA	5 cut(s)	97, 163, 373, 540, 630
Hpy188III	TCNNGA	2 cut(s)	551, 677
Hpy8I	GTNNAC	3 cut(s)	207, 448, 525
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	75, 325, 761
HpyCH4III	ACNGT	3 cut(s)	263, 452, 687
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	415, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 254
HpyF3I	CTNAG	1 cut(s)	539
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	4 cut(s)	15, 23, 112, 144
HspAI	GCGC	3 cut(s)	23, 257, 391
Kzo9I	GATC	4 cut(s)	214, 594, 738, 742
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	30
Lsp1109I	GCAGC	2 cut(s)	370, 437
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	236, 471
MalI	GATC	4 cut(s)	216, 596, 740, 744
MboI	GATC	4 cut(s)	214, 594, 738, 742
MboII	GAAGA	3 cut(s)	55, 130, 569
MluCI	AATT	4 cut(s)	91, 99, 362, 534
MmeI	TCCRAC	1 cut(s)	704
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	2 cut(s)	102, 648
MspI	CCGG	3 cut(s)	224, 691, 764
MspR9I	CCNGG	3 cut(s)	200, 692, 764
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	31, 254
NciI	CCSGG	2 cut(s)	692, 764
NdeII	GATC	4 cut(s)	214, 594, 738, 742
NlaIII	CATG	4 cut(s)	15, 23, 112, 144
NlaIV	GGNNCC	2 cut(s)	605, 732
NmuCI	GTSAC	1 cut(s)	471
NsbI	TGCGCA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	5 cut(s)	79, 137, 158, 279, 319
PfoI	TCCNGGA	1 cut(s)	762
PkrI	GCNGC	2 cut(s)	360, 427
PpuMI	RGGWCCY	1 cut(s)	604
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	605, 732
PspPI	GGNCC	2 cut(s)	196, 604
PspPPI	RGGWCCY	1 cut(s)	604
RsaI	GTAC	3 cut(s)	351, 449, 667
RsaNI	GTAC	3 cut(s)	350, 448, 666
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	102, 648
SatI	GCNGC	2 cut(s)	359, 426
Sau3AI	GATC	4 cut(s)	214, 594, 738, 742
Sau96I	GGNCC	2 cut(s)	196, 604
ScrFI	CCNGG	3 cut(s)	200, 692, 764
SinI	GGWCC	2 cut(s)	196, 604
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	4 cut(s)	91, 99, 362, 534
SsiI	CCGC	1 cut(s)	656
StyD4I	CCNGG	3 cut(s)	198, 690, 762
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	3 cut(s)	263, 452, 687
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	41, 552, 741
TasI	AATT	4 cut(s)	91, 99, 362, 534
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	5 cut(s)	79, 137, 158, 279, 319
Tru1I	TTAA	2 cut(s)	102, 648
Tru9I	TTAA	2 cut(s)	102, 648
TscAI	CASTG	1 cut(s)	692
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	2 cut(s)	358, 425
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	3 cut(s)	129, 389, 569
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	692
VpaK11BI	GGWCC	2 cut(s)	196, 604
XmnI	GAANNNNTTC	1 cut(s)	534
ZraI	GACGTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.