Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

31725025 .. 31725574

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGACCCCTGTGCAGGCTGCATTTGCTGTGGCTGAGAAGAATGAACGGCCTCCAATGCCGGCTAGTTGTCAACCGGCACTGGCACACCTGATCAAGCGCTGCTGGGCGCCAAACCCCACGAAGCGGCCAGATTTCAGCGACATTGTGTCTGCTTTGGAGAAGTATGATGAGTGTGTGAAGGAGGGTCTTCCTCTCACGCACCACTCCGGCCTGGTAAGCAGAAATGTAATTCTTGAACGCTTGAAAGGCTGTGTATCCTTAAGCTCCTCCGTAACTGTACAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

96

Amino Acids

10.34

Weight (kDa)

8.44

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	6 - 52	1.5e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AciI	CCGC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	279
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	13, 123
AflII	CTTAAG	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	236, 244
AhdI	GACNNNNNGTC	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	4 cut(s)	47, 125, 208, 282
ApeKI	GCWGC	2 cut(s)	17, 99
AspLEI	GCGC	2 cut(s)	99, 109
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	4, 86
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	212
BciVI	GTATCC	1 cut(s)	265
BclI	TGATCA	1 cut(s)	90
BfaI	CTAG	1 cut(s)	63
BfoI	RGCGCY	2 cut(s)	100, 110
BfrI	CTTAAG	1 cut(s)	259
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	3 cut(s)	18, 100, 125
BlsI	GCNGC	3 cut(s)	19, 101, 126
Bme1390I	CCNGG	1 cut(s)	212
BmeRI	GACNNNNNGTC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 123
Bse118I	RCCGGY	2 cut(s)	58, 73
Bse1I	ACTGG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	2 cut(s)	13, 123
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	4, 86
BseYI	CCCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	4 cut(s)	49, 127, 210, 284
BshNI	GGYRCC	1 cut(s)	106
BsiSI	CCGG	3 cut(s)	59, 74, 207
BslI	CCNNNNNNNGG	2 cut(s)	13, 123
BsnI	GGCC	4 cut(s)	49, 127, 210, 284
Bsp1407I	TGTACA	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	4 cut(s)	49, 127, 210, 284
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	106
BspTI	CTTAAG	1 cut(s)	259
BsrFI	RCCGGY	2 cut(s)	58, 73
BsrGI	TGTACA	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	2 cut(s)	58, 73
BssMI	GATC	1 cut(s)	90
BssNI	GRCGYC	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	277
BstACI	GRCGYC	1 cut(s)	107
BstAFI	CTTAAG	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	15, 60
BstDEI	CTNAG	1 cut(s)	33
BstH2I	RGCGCY	2 cut(s)	100, 110
BstHHI	GCGC	2 cut(s)	99, 109
BstKTI	GATC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 55, 216, 246
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	4, 86
BstV2I	GAAGAC	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	4 cut(s)	49, 127, 210, 284
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	15, 60
CfoI	GCGC	2 cut(s)	99, 109
Cfr10I	RCCGGY	2 cut(s)	58, 73
Csp6I	GTAC	1 cut(s)	278
CviJI	RGCY	9 cut(s)	17, 32, 49, 62, 127, 210, 249, 264, 284
CviKI_1	RGCY	9 cut(s)	17, 32, 49, 62, 127, 210, 249, 264, 284
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	33
DinI	GGCGCC	1 cut(s)	108
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
DriI	GACNNNNNGTC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	125
Eam1105I	GACNNNNNGTC	1 cut(s)	145
Eco147I	AGGCCT	1 cut(s)	284
Eco47III	AGCGCT	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	108
EheI	GGCGCC	1 cut(s)	108
FaiI	YATR	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	18, 100, 125
Fsp4HI	GCNGC	3 cut(s)	18, 100, 125
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	2 cut(s)	98, 108
GluI	GCNGC	3 cut(s)	18, 100, 125
GsaI	CCCAGC	1 cut(s)	106
HaeII	RGCGCY	2 cut(s)	100, 110
HaeIII	GGCC	4 cut(s)	49, 127, 210, 284
HapII	CCGG	3 cut(s)	59, 74, 207
HhaI	GCGC	2 cut(s)	99, 109
Hin1I	GRCGYC	1 cut(s)	107
Hin6I	GCGC	2 cut(s)	97, 107
HinP1I	GCGC	2 cut(s)	97, 107
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HpaII	CCGG	3 cut(s)	59, 74, 207
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	13, 20
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 55, 216, 246
HpyF3I	CTNAG	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	107
HspAI	GCGC	2 cut(s)	97, 107
KasI	GGCGCC	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	2 cut(s)	4, 86
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	2 cut(s)	49, 179
MluCI	AATT	1 cut(s)	228
Mly113I	GGCGCC	1 cut(s)	107
MnlI	CCTC	4 cut(s)	60, 175, 201, 277
MroNI	GCCGGC	1 cut(s)	58
MseI	TTAA	1 cut(s)	260
MspCI	CTTAAG	1 cut(s)	259
MspI	CCGG	3 cut(s)	59, 74, 207
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	4 cut(s)	23, 55, 216, 246
NaeI	GCCGGC	1 cut(s)	60
NarI	GGCGCC	1 cut(s)	107
NdeII	GATC	1 cut(s)	90
NgoMIV	GCCGGC	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	108
PceI	AGGCCT	1 cut(s)	284
PdiI	GCCGGC	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	19, 101, 126
PluTI	GGCGCC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	108
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	3 cut(s)	18, 100, 125
Sau3AI	GATC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	2 cut(s)	90, 266
SfoI	GGCGCC	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	228
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	1 cut(s)	124
SspDI	GGCGCC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	277
TasI	AATT	1 cut(s)	228
TatI	WGTACW	1 cut(s)	277
TauI	GCSGC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	2 cut(s)	17, 99
TspDTI	ATGAA	1 cut(s)	57
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	1 cut(s)	84
Vha464I	CTTAAG	1 cut(s)	259
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.