pycom05g32700

Microtubule-associated protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
31995790 .. 31996862
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGGCGGGTTATGATGAAGAACAACTTGGAGTTGGAGGAGTTGGAGGAGATGAGCTGTCCCTTGTCCATCCAGACCCTGTTGTGTTAGAGCTCAATCGGATGCACAACCTACTCAAAGAAAAGAGTCGGGAGTTGGGGATTGCTCATGGTGAGATCAAGGCTCTCAGAGCTACTGAAGTTCAAAAGGATAAGGCTGTAGAAGAGCTCAGAAATGAAGTACAGAAATTGGACGAAAAACACCGAGTCACAGAAAGTCTTCTCCAGCACAAGGTGTGTTTGATTACTGAGATTTTCGAATTTCGGGTATCCTTATGTCTGATGAACTTTTGTCAGTAA

Protein Analysis

112

Amino Acids

12.59

Weight (kDa)

5.34

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAP70 PF07058 21 - 97 2.7e-24 Microtubule-associated protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 195
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 1 cut(s) 182
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 4 cut(s) 55, 91, 170, 205
AluI AGCT 4 cut(s) 55, 91, 170, 205
Alw21I GWGCWC 2 cut(s) 93, 207
AlwNI CAGNNNCTG 1 cut(s) 77
ApoI RAATTY 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 161
AsuII TTCGAA 1 cut(s) 294
BanII GRGCYC 2 cut(s) 93, 207
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 2 cut(s) 93, 207
BccI CCATC 1 cut(s) 75
BciVI GTATCC 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 316
BmsI GCATC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 245
Bpu14I TTCGAA 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseGI GGATG 2 cut(s) 67, 105
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 3 cut(s) 178, 220, 276
BseRI GAGGAG 2 cut(s) 51, 60
BsiHKAI GWGCWC 2 cut(s) 93, 207
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 43
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 93, 207
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 177, 219, 277
BspQI GCTCTTC 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 294
BssMI GATC 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 294
BstDEI CTNAG 3 cut(s) 164, 206, 285
BstF5I GGATG 2 cut(s) 67, 105
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 248
BsuI GTATCC 1 cut(s) 316
BtsCI GGATG 2 cut(s) 67, 105
CaiI CAGNNNCTG 1 cut(s) 77
Csp6I GTAC 1 cut(s) 218
CviAII CATG 1 cut(s) 146
CviJI RGCY 6 cut(s) 55, 91, 161, 170, 194, 205
CviKI_1 RGCY 6 cut(s) 55, 91, 161, 170, 194, 205
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 3 cut(s) 164, 206, 285
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
DraIII CACNNNGTG 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Ecl136II GAGCTC 2 cut(s) 91, 205
Eco24I GRGCYC 2 cut(s) 93, 207
Eco53kI GAGCTC 2 cut(s) 91, 205
Eco57I CTGAAG 1 cut(s) 195
EcoICRI GAGCTC 2 cut(s) 91, 205
EcoT38I GRGCYC 2 cut(s) 93, 207
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 12, 147, 313
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 1 cut(s) 43
FatI CATG 1 cut(s) 145
FokI GGATG 2 cut(s) 54, 112
FriOI GRGCYC 2 cut(s) 93, 207
GsuI CTGGAG 1 cut(s) 245
Hin1II CATG 1 cut(s) 149
HinfI GANTC 2 cut(s) 124, 243
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 4 cut(s) 99, 167, 209, 318
Hpy188III TCNNGA 2 cut(s) 71, 128
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 3 cut(s) 164, 206, 285
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 153
LguI GCTCTTC 1 cut(s) 195
LpnPI CCDG 3 cut(s) 84, 90, 275
LweI GCATC 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 3 cut(s) 29, 212, 248
MhlI GDGCHC 2 cut(s) 93, 207
MluCI AATT 2 cut(s) 224, 296
MlyI GAGTC 2 cut(s) 133, 252
MmeI TCCRAC 2 cut(s) 13, 22
MnlI CCTC 2 cut(s) 29, 38
MroXI GAANNNNTTC 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 1 cut(s) 153
NlaIII CATG 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 244
NspV TTCGAA 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 255
PleI GAGTC 2 cut(s) 132, 251
PpsI GAGTC 2 cut(s) 132, 251
Psp124BI GAGCTC 2 cut(s) 93, 207
PstNI CAGNNNCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SacI GAGCTC 2 cut(s) 93, 207
SapI GCTCTTC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 153
SchI GAGTC 2 cut(s) 133, 252
SduI GDGCHC 2 cut(s) 93, 207
SetI ASST 6 cut(s) 57, 93, 111, 172, 207, 273
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 294
Sse9I AATT 2 cut(s) 224, 296
SsiI CCGC 1 cut(s) 5
SstI GAGCTC 2 cut(s) 93, 207
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 224, 296
TatI WGTACW 1 cut(s) 217
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 3 cut(s) 30, 228, 335
XapI RAATTY 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.