Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

32051867 .. 32053889

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTGTTTCAGATTGACTCAGAGTTTGTGGAAGTTGTTACCGTCAGGTATGAATTGTATGAAGTCCTTGTCTATCAATTGGGTGGAGCCATGTGTAAGCTTATAAACTTAAATCTGACTACTTTGTACAATGATTTGCAATCTTTACCTGCGAGCATGAAGCTACATTCCAACTGGTATTTAGGGGGAAGCATGTCGTTCACTCTTATGCACTGCACGACGAAAGCAAGATTTTATACTCTCTGTATTTCATCATTTGTAAAATATACCGATAAATTCAATAAAAACATGGGAAGAGAGGCTGAGGCTCAGCTTCGTCGTAGACATCGAACAACAACATTATCAATGGCCGCTGAAGGTGAAACTAGTTCAGAAAGTCTTGTTCTAAGTGGTATGCATGACCATTACGGAGGTGTCATCGTCCACATCAACGACAATGATCCCATGGATCCTGCCACCTTCCTTTCATTGCTTACCTCCTCTATTGCCCACTGGAAGCTTCAGGGGAAAAAGGGTGTTTGGATCAAGTTGCCTATAGAACGAGTCAATCTTGTTGAAGTTGCGGTCAAGGAGGGATTCTGGTACCATCATGCAGAGCCTAAGTATTTGATGCTCGTGTATTGGATTCCACAATCCTCTCACACCCTTCCTTCCAATGCCACCCACCGTGTCGGAATTGGCGCTTTCGTCCTCAACCCTAACACCAGACAGGTGCTAGCAGTCCAAGAAAAGAGCGGGGTTTTACAGGGGACAGGTGTGTGGAAGTTCCCTACTGGAGTTGTAGACGAGGGAGAAGATATCTGTGTAGCTGCTGTGAGAGAAGTCAAAGAAGAAACTGGAATTGACTCGGAGTTTGTAGAAGTTCTAGCATTCAGCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

294

Amino Acids

32.96

Weight (kDa)

6.12

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	129 - 209	1.1e-30	Nudix hydrolase domain
NUDIX	PF00293	222 - 290	4.4e-16	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	157
Acc65I	GGTACC	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	582
AccBSI	CCGCTC	1 cut(s)	735
AccI	GTMKAC	2 cut(s)	322, 783
AciI	CCGC	3 cut(s)	351, 563, 735
AclWI	GGATC	4 cut(s)	434, 443, 456, 530
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	2 cut(s)	375, 485
AfaI	GTAC	2 cut(s)	128, 584
AgsI	TTSAA	2 cut(s)	280, 557
AhlI	ACTAGT	1 cut(s)	365
AluBI	AGCT	5 cut(s)	100, 163, 313, 499, 809
AluI	AGCT	5 cut(s)	100, 163, 313, 499, 809
AlwI	GGATC	4 cut(s)	434, 443, 456, 530
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	809
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	4 cut(s)	8, 40, 836, 868
Asp718I	GGTACC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	683
AsuHPI	GGTGA	1 cut(s)	371
AsuNHI	GCTAGC	1 cut(s)	715
BamHI	GGATCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	582
BauI	CACGAG	1 cut(s)	614
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	796
BccI	CCATC	1 cut(s)	594
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	3 cut(s)	366, 716, 866
BfmI	CTRYAG	1 cut(s)	534
BfoI	RGCGCY	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	2 cut(s)	351, 810
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	2 cut(s)	352, 811
BmiI	GGNNCC	3 cut(s)	88, 450, 584
BmsI	GCATC	1 cut(s)	600
BmtI	GCTAGC	1 cut(s)	719
BpmI	CTGGAG	1 cut(s)	795
Bpu10I	CCTNAGC	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	444
Bse1I	ACTGG	4 cut(s)	179, 497, 778, 841
Bse3DI	GCAATG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	3 cut(s)	33, 294, 323
BseNI	ACTGG	4 cut(s)	179, 497, 778, 841
BseRI	GAGGAG	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	796
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	350
BshNI	GGYRCC	1 cut(s)	582
BslFI	GGGAC	1 cut(s)	763
BsmFI	GGGAC	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	869
BsnI	GGCC	1 cut(s)	350
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	439, 448, 522
Bsp1720I	GCTNAGC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	3 cut(s)	351, 563, 735
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	3 cut(s)	32, 295, 322
BspLI	GGNNCC	3 cut(s)	88, 450, 584
BspMI	ACCTGC	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	719
BspPI	GGATC	4 cut(s)	434, 443, 456, 530
BspT107I	GGYRCC	1 cut(s)	582
BsrBI	CCGCTC	1 cut(s)	735
BsrDI	GCAATG	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	4 cut(s)	179, 497, 778, 841
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	3 cut(s)	439, 448, 522
BssSI	CACGAG	1 cut(s)	614
BssT1I	CCWWGG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	43, 668
Bst6I	CTCTTC	1 cut(s)	289
BstAUI	TGTACA	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	154, 717
BstDEI	CTNAG	5 cut(s)	19, 303, 309, 386, 600
BstDSI	CCRYGG	1 cut(s)	444
BstH2I	RGCGCY	1 cut(s)	684
BstHHI	GCGC	1 cut(s)	683
BstKTI	GATC	3 cut(s)	442, 451, 525
BstMBI	GATC	3 cut(s)	439, 448, 522
BstNSI	RCATGY	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	796
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	444
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	211, 490
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	154, 717
CfoI	GCGC	1 cut(s)	683
Csp6I	GTAC	2 cut(s)	127, 583
CviAII	CATG	7 cut(s)	91, 157, 193, 289, 398, 445, 590
CviQI	GTAC	2 cut(s)	127, 583
DdeI	CTNAG	5 cut(s)	19, 303, 309, 386, 600
DpnI	GATC	3 cut(s)	441, 450, 524
DpnII	GATC	3 cut(s)	439, 448, 522
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	444
Eco32I	GATATC	1 cut(s)	799
Eco57I	CTGAAG	2 cut(s)	375, 485
EcoRV	GATATC	1 cut(s)	799
EcoT14I	CCWWGG	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	7 cut(s)	94, 160, 196, 292, 401, 448, 593
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	7 cut(s)	90, 156, 192, 288, 397, 444, 589
FauI	CCCGC	1 cut(s)	728
FblI	GTMKAC	2 cut(s)	322, 783
Fnu4HI	GCNGC	2 cut(s)	351, 810
Fsp4HI	GCNGC	2 cut(s)	351, 810
FspBI	CTAG	3 cut(s)	366, 716, 866
GlaI	GCGC	1 cut(s)	682
GluI	GCNGC	2 cut(s)	351, 810
GsuI	CTGGAG	1 cut(s)	795
HaeII	RGCGCY	1 cut(s)	684
HaeIII	GGCC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	683
Hin1II	CATG	7 cut(s)	94, 160, 196, 292, 401, 448, 593
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HindIII	AAGCTT	2 cut(s)	98, 497
HinfI	GANTC	5 cut(s)	17, 543, 576, 625, 845
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	4 cut(s)	201, 323, 424, 784
Hpy188I	TCNGA	6 cut(s)	12, 22, 117, 373, 674, 850
Hpy8I	GTNNAC	4 cut(s)	201, 323, 424, 784
Hpy99I	CGWCG	2 cut(s)	223, 321
HpyAV	CCTTC	4 cut(s)	350, 469, 656, 660
HpyCH4III	ACNGT	2 cut(s)	43, 668
HpyCH4V	TGCA	5 cut(s)	139, 211, 216, 397, 593
HpyF3I	CTNAG	5 cut(s)	19, 303, 309, 386, 600
Hsp92II	CATG	7 cut(s)	94, 160, 196, 292, 401, 448, 593
HspAI	GCGC	1 cut(s)	681
KpnI	GGTACC	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	439, 448, 522
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	1 cut(s)	796
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	3 cut(s)	366, 716, 866
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	441, 450, 524
MbiI	CCGCTC	1 cut(s)	735
MboI	GATC	3 cut(s)	439, 448, 522
MboII	GAAGA	3 cut(s)	306, 806, 842
MfeI	CAATTG	1 cut(s)	77
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	5 cut(s)	53, 77, 275, 675, 840
MlyI	GAGTC	3 cut(s)	11, 552, 839
MmeI	TCCRAC	2 cut(s)	195, 652
MnlI	CCTC	9 cut(s)	292, 298, 404, 487, 490, 565, 646, 701, 781
Mph1103I	ATGCAT	1 cut(s)	399
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	869
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	3 cut(s)	439, 448, 522
NheI	GCTAGC	1 cut(s)	715
NlaIII	CATG	7 cut(s)	94, 160, 196, 292, 401, 448, 593
NlaIV	GGNNCC	3 cut(s)	88, 450, 584
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PctI	GAATGC	1 cut(s)	869
PfeI	GAWTC	2 cut(s)	576, 625
PkrI	GCNGC	2 cut(s)	352, 811
PleI	GAGTC	3 cut(s)	11, 551, 839
PpsI	GAGTC	3 cut(s)	11, 551, 839
PsiI	TTATAA	1 cut(s)	104
PspN4I	GGNNCC	3 cut(s)	88, 450, 584
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	2 cut(s)	128, 584
RsaNI	GTAC	2 cut(s)	127, 583
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	2 cut(s)	351, 810
Sau3AI	GATC	3 cut(s)	439, 448, 522
SchI	GAGTC	3 cut(s)	11, 552, 839
SfaNI	GCATC	1 cut(s)	600
SfcI	CTRYAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	206
SpeI	ACTAGT	1 cut(s)	365
Sse9I	AATT	5 cut(s)	53, 77, 275, 675, 840
SsiI	CCGC	3 cut(s)	351, 563, 735
SspMI	CTAG	3 cut(s)	366, 716, 866
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	43, 668
TaqI	TCGA	1 cut(s)	328
TasI	AATT	5 cut(s)	53, 77, 275, 675, 840
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	576, 625
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	2 cut(s)	218, 497
TseI	GCWGC	1 cut(s)	809
TspDTI	ATGAA	5 cut(s)	66, 75, 173, 240, 456
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	2 cut(s)	218, 497
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	196
XmiI	GTMKAC	2 cut(s)	322, 783
XspI	CTAG	3 cut(s)	366, 716, 866
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.