pycom05g32890

Phosphoglycolate phosphatase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
32114379 .. 32114757
379 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGTATATTTCGTGCATTAAGACGAAGGCCGAAGAAATTGTGGATAAACATTTAAGAAATCAAATGCCAAGCAAGTCCTGCACCGGACCTAAATTTCATCGCAAACTGACGGGCTCGCTCAAAAATTGTCAACACGCACGCACGCACGCAAATGGTCGACGTCGTTTGGGTCACGAGCATTTCATATTTATGATAATTGCACTGAGCAGGTCTGCAGGTGTCATTTGGAAGGGCGATAAGCTCATCGATGGCGTCCCTCGGACACTCCACTTCCTTCGATCAAAGGCATTCTCTCTCTCTCTCTCTTCCATTAAACGAGGGGCAACTGAGATTTAG

Protein Analysis

112

Amino Acids

12.57

Weight (kDa)

10.62

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
AatII GACGTC 1 cut(s) 163
Acc36I ACCTGC 2 cut(s) 198, 206
AccI GTMKAC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 92
AcyI GRCGYC 2 cut(s) 160, 252
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
AoxI GGCC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 116
BauI CACGAG 1 cut(s) 173
BccI CCATC 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 2 cut(s) 198, 206
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
Bsa29I ATCGAT 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 160, 252
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 194, 318
BsgI GTGCAG 1 cut(s) 64
BshFI GGCC 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 246
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 278
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 195, 319
BspDI ATCGAT 1 cut(s) 246
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 2 cut(s) 198, 206
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 1 cut(s) 278
BssNI GRCGYC 2 cut(s) 160, 252
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 2 cut(s) 160, 252
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 4 cut(s) 116, 139, 143, 147
BstDEI CTNAG 2 cut(s) 203, 327
BstKTI GATC 1 cut(s) 281
BstMBI GATC 1 cut(s) 278
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 1 cut(s) 29
BsuTUI ATCGAT 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 200
BveI ACCTGC 2 cut(s) 198, 206
Cac8I GCNNGC 4 cut(s) 116, 139, 143, 147
Cfr13I GGNCC 1 cut(s) 86
ClaI ATCGAT 1 cut(s) 246
CseI GACGC 1 cut(s) 241
CviJI RGCY 3 cut(s) 29, 114, 241
CviKI_1 RGCY 3 cut(s) 29, 114, 241
DdeI CTNAG 2 cut(s) 203, 327
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 116
FaiI YATR 3 cut(s) 6, 185, 191
FaqI GGGAC 1 cut(s) 239
FblI GTMKAC 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 241
Hin1I GRCGYC 2 cut(s) 160, 252
HincII GTYRAC 2 cut(s) 131, 158
HindII GTYRAC 2 cut(s) 131, 158
HpaII CCGG 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 131, 158
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 2 cut(s) 131, 158
Hpy99I CGWCG 2 cut(s) 162, 165
HpyAV CCTTC 3 cut(s) 19, 223, 284
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 15, 81, 200, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 203, 327
HpySE526I ACGT 1 cut(s) 160
Hsp92I GRCGYC 2 cut(s) 160, 252
Kzo9I GATC 1 cut(s) 278
LpnPI CCDG 4 cut(s) 91, 97, 193, 201
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 2 cut(s) 44, 297
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 4 cut(s) 36, 92, 124, 195
MnlI CCTC 2 cut(s) 267, 311
MseI TTAA 3 cut(s) 18, 53, 312
MslI CAYNNNNRTG 2 cut(s) 150, 188
MspI CCGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 1 cut(s) 278
NmuCI GTSAC 1 cut(s) 170
PaqCI CACCTGC 1 cut(s) 206
PctI GAATGC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 86
PstI CTGCAG 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 150, 188
SalI GTCGAC 1 cut(s) 156
SaqAI TTAA 3 cut(s) 18, 53, 312
Sau3AI GATC 1 cut(s) 278
Sau96I GGNCC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 116
SetI ASST 5 cut(s) 91, 163, 212, 220, 243
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 86
SmiMI CAYNNNNRTG 2 cut(s) 150, 188
Sse9I AATT 4 cut(s) 36, 92, 124, 195
TaiI ACGT 1 cut(s) 163
TaqI TCGA 3 cut(s) 157, 246, 277
TasI AATT 4 cut(s) 36, 92, 124, 195
Tru1I TTAA 3 cut(s) 18, 53, 312
Tru9I TTAA 3 cut(s) 18, 53, 312
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 86, 172
TspRI CASTG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 157
ZraI GACGTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.