pycom05g33020

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
32212109 .. 32212333
225 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGCCAGTTAATAATAATCATCATCTTGCCATTCTTCGTTTTCTGAAGTTTCTCGCCGTCAATAACGCTTCAACACTGTCGCCAGCCACTCTCGAAATCAACCAATTACTTTCAAAGTGCTTCAACCGTGAGATATTAGCTCTAGGCGGCTGTGGCCAAGTCAAACAAGCAAGGAATCTGTTCGACCATATGCCTCAACCAGACGCTTTCCTTATGCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.26

Weight (kDa)

8.84

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 65
AgsI TTSAA 3 cut(s) 72, 114, 124
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
AoxI GGCC 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 179
BalI TGGCCA 1 cut(s) 156
BceAI ACGGC 1 cut(s) 41
BfaI CTAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 5
BshFI GGCC 1 cut(s) 156
BsnI GGCC 1 cut(s) 156
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 5
Bst4CI ACNGT 2 cut(s) 78, 128
BstC8I GCNNGC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 84
CseI GACGC 1 cut(s) 212
CviAII CATG 1 cut(s) 222
CviJI RGCY 4 cut(s) 86, 140, 150, 156
CviKI_1 RGCY 4 cut(s) 86, 140, 150, 156
EaeI YGGCCR 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 65
FaeI CATG 1 cut(s) 225
FaiI YATR 4 cut(s) 189, 191, 215, 223
FatI CATG 1 cut(s) 221
FauNDI CATATG 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 148
HaeIII GGCC 1 cut(s) 156
HgaI GACGC 1 cut(s) 212
Hin1II CATG 1 cut(s) 225
HinfI GANTC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 78, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 225
LpnPI CCDG 3 cut(s) 18, 96, 213
MaeI CTAG 1 cut(s) 143
MboII GAAGA 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 1 cut(s) 104
MluNI TGGCCA 1 cut(s) 156
MnlI CCTC 1 cut(s) 204
Mox20I TGGCCA 1 cut(s) 156
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 156
MseI TTAA 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeI CATATG 1 cut(s) 189
NlaIII CATG 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 148
SetI ASST 1 cut(s) 142
Sse9I AATT 1 cut(s) 104
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 78, 128
TaqI TCGA 2 cut(s) 93, 183
TasI AATT 1 cut(s) 104
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 81
TspRI CASTG 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.