Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

49505 .. 49888

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCCTTTGCTGTCGGGGTTGTCTTGTTGGACCTATTATCTGGAAGAAGCCGCAGCCGCTGCTGCTGCCGATGACATTGAGAAGAACAATGAAGAGGTATTGCTATCTGCATCCATAAATGGGGTGTTGGAAGGAGACCATTTGGCTCAATGCTGTGTTGCTCCTCAAATCAACTCTCCCCCAACCATGGCTGAAGCCTTCCTCACACTCTCCAAGATTCTTTTGTCTACGCTCGACTGGGATCCATCTGATTATGATCAACTTCAACTCCACCAGCATCCAAGTTTCGTTGCTAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

101

Amino Acids

10.89

Weight (kDa)

4.26

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	227
AciI	CCGC	2 cut(s)	51, 57
AclWI	GGATC	2 cut(s)	236, 249
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	120, 187
AgsI	TTSAA	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	236, 249
AlwNI	CAGNNNCTG	1 cut(s)	59
ApeKI	GCWGC	4 cut(s)	53, 59, 62, 65
AspS9I	GGNCC	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	46, 49, 52, 65
BccI	CCATC	1 cut(s)	253
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	129
BisI	GCNGC	6 cut(s)	51, 54, 57, 60, 63, 66
BlsI	GCNGC	6 cut(s)	52, 55, 58, 61, 64, 67
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	2 cut(s)	119, 286
BmuI	ACTGGG	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 187
Bse1I	ACTGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	110, 277
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	120, 187
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	46, 49, 52, 65
BslI	CCNNNNNNNGG	2 cut(s)	120, 187
BsmAI	GTCTC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	241, 256
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	2 cut(s)	51, 57
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	236, 249
BspTNI	GGTCTC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	241, 256
BssT1I	CCWWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	110, 277
BstKTI	GATC	2 cut(s)	244, 259
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	2 cut(s)	241, 256
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 59, 62, 65
BstV1I	GCAGC	4 cut(s)	46, 49, 52, 65
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	110, 277
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	30
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	5 cut(s)	50, 56, 146, 191, 197
CviKI_1	RGCY	5 cut(s)	50, 56, 146, 191, 197
DpnI	GATC	2 cut(s)	243, 258
DpnII	GATC	2 cut(s)	241, 256
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	190
FaiI	YATR	3 cut(s)	116, 188, 255
FatI	CATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	6 cut(s)	51, 54, 57, 60, 63, 66
FokI	GGATG	2 cut(s)	97, 264
Fsp4HI	GCNGC	6 cut(s)	51, 54, 57, 60, 63, 66
GluI	GCNGC	6 cut(s)	51, 54, 57, 60, 63, 66
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	125, 208
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 59, 62, 65
Hsp92II	CATG	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	241, 256
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	3 cut(s)	26, 223, 287
Lsp1109I	GCAGC	4 cut(s)	46, 49, 52, 65
LweI	GCATC	2 cut(s)	119, 286
MalI	GATC	2 cut(s)	243, 258
MboI	GATC	2 cut(s)	241, 256
MboII	GAAGA	3 cut(s)	56, 94, 104
MflI	RGATCY	1 cut(s)	241
MmeI	TCCRAC	2 cut(s)	8, 108
MnlI	CCTC	3 cut(s)	88, 174, 212
MspA1I	CMGCKG	1 cut(s)	59
MwoI	GCNNNNNNNGC	4 cut(s)	56, 59, 62, 65
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	2 cut(s)	241, 256
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	6 cut(s)	52, 55, 58, 61, 64, 67
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	241
SatI	GCNGC	6 cut(s)	51, 54, 57, 60, 63, 66
Sau3AI	GATC	2 cut(s)	241, 256
Sau96I	GGNCC	1 cut(s)	30
SetI	ASST	2 cut(s)	35, 99
SfaNI	GCATC	2 cut(s)	119, 286
SgeI	CNNG	9 cut(s)	27, 36, 53, 199, 226, 245, 250, 286, 294
SinI	GGWCC	1 cut(s)	30
SsiI	CCGC	2 cut(s)	51, 57
StyI	CCWWGG	1 cut(s)	186
TaqI	TCGA	1 cut(s)	234
TauI	GCSGC	2 cut(s)	53, 59
TfiI	GAWTC	1 cut(s)	217
TseI	GCWGC	4 cut(s)	53, 59, 62, 65
TspDTI	ATGAA	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	30
XmiI	GTMKAC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.