Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

373960 .. 374587

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGTTTGGTATGTACTTTTACCTTTTGGAGACTGGCAAGTAGGCGCAGGAGAGCCAACTGGGTTTAAATCCGTCGCTGCCTTCTACCCAGAACAAGAGAATGGCATTCTTTCTGGGGCTGCTGCCTCAGTTAGCGTTGTGATCACGGGGCTTGGTCCGGATTTTACAAAGATGGAATCCTTTGGTAAAGTAGAAGCTTTTGCAGAGACTGGTACTAGCCATTTTGCATTAATTTTAATTGCATATGGGACTTCAAAGGTTAGTGGATTAGATAGGAGCTGGCAAAGGCCTGCAGGAGTGGCAGCAAAACTTATAGATTGCAAAGCATCTAAAGGTAATTCTCCACTCATAGTCATACATACCAACTCAGGATTGTTCATGAGTTATGACGGCTTGAATTTGATGACGATAAGGACGATCGTCAGGGCTTCTGAAATTATTAAATTAAAGAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

153

Amino Acids

16.19

Weight (kDa)

8.71

Isoelectric Point (pI)

23.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	397
AfaI	GTAC	2 cut(s)	15, 214
AgsI	TTSAA	2 cut(s)	255, 397
AluBI	AGCT	2 cut(s)	197, 279
AluI	AGCT	2 cut(s)	197, 279
Alw26I	GTCTC	2 cut(s)	24, 200
AlwNI	CAGNNNCTG	1 cut(s)	209
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	4 cut(s)	77, 119, 122, 302
ApoI	RAATTY	1 cut(s)	397
AseI	ATTAAT	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	155
BbvI	GCAGC	4 cut(s)	64, 106, 109, 314
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	406
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	24, 200
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	4 cut(s)	78, 120, 123, 303
BlsI	GCNGC	4 cut(s)	79, 121, 124, 304
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	69
BoxI	GACNNNNGTC	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	157
Bse1I	ACTGG	3 cut(s)	38, 64, 214
BseAI	TCCGGA	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	141, 381
BseNI	ACTGG	3 cut(s)	38, 64, 214
BseXI	GCAGC	4 cut(s)	64, 106, 109, 314
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	289
BsiEI	CGRYCG	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	24, 200
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	289
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	141, 417
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	140, 380
BspEI	TCCGGA	1 cut(s)	157
BspHI	TCATGA	1 cut(s)	378
BspMAI	CTGCAG	1 cut(s)	295
BsrI	ACTGG	3 cut(s)	38, 64, 214
BssMI	GATC	2 cut(s)	141, 417
BstC8I	GCNNGC	2 cut(s)	281, 291
BstDEI	CTNAG	2 cut(s)	127, 367
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	144, 420
BstMAI	GTCTC	2 cut(s)	24, 200
BstMBI	GATC	2 cut(s)	141, 417
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstPAI	GACNNNNGTC	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	4 cut(s)	64, 106, 109, 314
BsuRI	GGCC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	281, 291
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	14, 213
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	9 cut(s)	55, 119, 151, 197, 219, 279, 289, 393, 428
CviKI_1	RGCY	9 cut(s)	55, 119, 151, 197, 219, 279, 289, 393, 428
CviQI	GTAC	2 cut(s)	14, 213
DdeI	CTNAG	2 cut(s)	127, 367
DpnI	GATC	2 cut(s)	143, 419
DpnII	GATC	2 cut(s)	141, 417
DraI	TTTAAA	1 cut(s)	67
Eco147I	AGGCCT	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	155
FaeI	CATG	1 cut(s)	382
FaiI	YATR	9 cut(s)	12, 244, 246, 314, 350, 356, 360, 380, 387
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	378
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	78, 120, 123, 303
Fsp4HI	GCNGC	4 cut(s)	78, 120, 123, 303
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	4 cut(s)	78, 120, 123, 303
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	3 cut(s)	158, 369, 379
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	203, 227, 242, 293, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	127, 367
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	45
Kpn2I	TCCGGA	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	141, 417
LmnI	GCTCC	1 cut(s)	276
Lsp1109I	GCAGC	4 cut(s)	64, 106, 109, 314
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	1 cut(s)	216
MalI	GATC	2 cut(s)	143, 419
MboI	GATC	2 cut(s)	141, 417
MluCI	AATT	6 cut(s)	231, 237, 337, 397, 435, 443
MnlI	CCTC	1 cut(s)	136
MroI	TCCGGA	1 cut(s)	157
MseI	TTAA	5 cut(s)	66, 230, 236, 441, 446
MspI	CCGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	2 cut(s)	141, 417
NlaIII	CATG	1 cut(s)	382
PagI	TCATGA	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PctI	GAATGC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	4 cut(s)	79, 121, 124, 304
Ple19I	CGATCG	1 cut(s)	420
PshAI	GACNNNNGTC	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	420
RsaI	GTAC	2 cut(s)	15, 214
RsaNI	GTAC	2 cut(s)	14, 213
SaqAI	TTAA	5 cut(s)	66, 230, 236, 441, 446
SatI	GCNGC	4 cut(s)	78, 120, 123, 303
Sau3AI	GATC	2 cut(s)	141, 417
Sau96I	GGNCC	1 cut(s)	155
SbfI	CCTGCAGG	1 cut(s)	295
SdaI	CCTGCAGG	1 cut(s)	295
SetI	ASST	5 cut(s)	25, 199, 261, 281, 337
SfaNI	GCATC	1 cut(s)	335
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	155
Sse8387I	CCTGCAGG	1 cut(s)	295
Sse9I	AATT	6 cut(s)	231, 237, 337, 397, 435, 443
SseBI	AGGCCT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	289
TasI	AATT	6 cut(s)	231, 237, 337, 397, 435, 443
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	5 cut(s)	66, 230, 236, 441, 446
Tru9I	TTAA	5 cut(s)	66, 230, 236, 441, 446
TseI	GCWGC	4 cut(s)	77, 119, 122, 302
TspDTI	ATGAA	1 cut(s)	367
TspGWI	ACGGA	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	155
VspI	ATTAAT	1 cut(s)	230
XapI	RAATTY	1 cut(s)	397
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.