pycom06g00680

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0029292
Physical Location & Seq
Reverse (-)
619619 .. 621999
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 921 bp
ATGGCTGAAATCCGTGAAGTGATCGAGCTGCCCGTAAGTTATTCCGAGCTTTTTACATCAGTTGGTGTGAAAGCTCCAGAAGGAATTATGCTTCCTGGACTTCCGGGTTCAGGAAAGGCACTAATAGTCAGAGATAATTATGCTGGTGGAACAAATAAGCACTTCCAGAATGCTCTTGCAACAAGCAATCTGGCTGCTTTGCATGAAACAGTGAGTTATAAATCCTTGTGTTTTTTTTTTGAATTATTTGTCTTGTCATATTTTGTCGTATTAGCTTTGGTTTCATATTTGAAGCTTCCGCACAACAACGGGATGATTAGTCCTTTTATACGAGAGCTGGGTGGCGAGAGCAGCATTAGTGCTAGGTACGACGAAATTAGAAGTGATGATGGCATCGATGAACGTGCTAGTGCCAGTGGTGGTGGGGACGACGAGATTAGCAGTGAGGATGGCAGCGATGAACAAAGTGCTGATGAAGAAGATGTACCAAAGCCGCCCACTGCTTCTACTAGATCCGCTTGGGGTAGAGTCGCCCGATGGACCATTGGTGTGTCAATCCCACTAATAGCAGGGAGTGCCACTATAGTGTCTACAAGGTCAAGGGGCATCACTTTTGATGTGTTCAATTTCTTTACGAACGGACTATCCTTTTTAACGCTGTTGCTCCCTACAATCATTTTGAGTGTAACTGTTTTCCATTTCGTGAACAGGCCTTTATCCCAGATTTGGTTGTCTTTTGGTGCCCAATTCTTGCCAGCCCAATTTACTGTTTGCTTGCAATCGGTTGTCCCCGCATTGACATACTTGATCTCATTAATCTTCAGGATACAGTCGATCTCTATTCGCAAGAAGAGCGACCAAGCAAAACTGGGGGGGTCTAGTAATAACTTTTTGTGGGGCGTTCTTGATTGGAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

307

Amino Acids

33.37

Weight (kDa)

5.3

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029292)

Species Orthologous Gene IDs
pyrus_communis pycom06g00680 pycom06g00870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 740
AccI GTMKAC 1 cut(s) 590
AciI CCGC 4 cut(s) 299, 494, 516, 792
AclWI GGATC 1 cut(s) 507
AcuI CTGAAG 1 cut(s) 805
AfaI GTAC 2 cut(s) 368, 486
AfiI CCNNNNNNNGG 2 cut(s) 110, 726
AgsI TTSAA 3 cut(s) 242, 292, 625
AjnI CCWGG 1 cut(s) 94
AleI CACNNNNGTG 1 cut(s) 584
AloI GAACNNNNNNTCC 2 cut(s) 629, 661
AluBI AGCT 6 cut(s) 28, 49, 74, 275, 295, 337
AluI AGCT 6 cut(s) 28, 49, 74, 275, 295, 337
AlwI GGATC 1 cut(s) 507
AoxI GGCC 1 cut(s) 710
ApeKI GCWGC 4 cut(s) 28, 194, 351, 453
AseI ATTAAT 1 cut(s) 815
AspS9I GGNCC 1 cut(s) 540
AsuC2I CCSGG 1 cut(s) 105
AvaII GGWCC 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 745
BanI GGYRCC 1 cut(s) 740
BarI GAAGNNNNNNTAC 2 cut(s) 468, 500
BbvI GCAGC 4 cut(s) 15, 181, 363, 465
BccI CCATC 3 cut(s) 383, 443, 531
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 1 cut(s) 96
BciVI GTATCC 1 cut(s) 819
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 4 cut(s) 363, 408, 510, 879
BfmI CTRYAG 1 cut(s) 582
BfuI GTATCC 1 cut(s) 819
BisI GCNGC 5 cut(s) 29, 195, 352, 454, 494
BlsI GCNGC 5 cut(s) 30, 196, 353, 455, 495
Bme1390I CCNGG 2 cut(s) 96, 105
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 742
BmrFI CCNGG 2 cut(s) 96, 105
BmrI ACTGGG 1 cut(s) 878
BmsI GCATC 2 cut(s) 402, 615
BmuI ACTGGG 1 cut(s) 878
BpmI CTGGAG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 105
Bsa29I ATCGAT 1 cut(s) 396
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 726
Bse1I ACTGG 2 cut(s) 414, 873
BseBI CCWGG 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 396
BseGI GGATG 2 cut(s) 318, 454
BseLI CCNNNNNNNGG 2 cut(s) 110, 726
BseNI ACTGG 2 cut(s) 414, 873
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 4 cut(s) 15, 181, 363, 465
BseYI CCCAGC 1 cut(s) 337
BshFI GGCC 1 cut(s) 712
BshNI GGYRCC 1 cut(s) 740
BshVI ATCGAT 1 cut(s) 396
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 2 cut(s) 440, 773
BslI CCNNNNNNNGG 2 cut(s) 110, 726
BsmFI GGGAC 2 cut(s) 440, 773
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 712
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 4 cut(s) 21, 512, 807, 834
BspACI CCGC 4 cut(s) 299, 494, 516, 792
BspANI GGCC 1 cut(s) 712
BspDI ATCGAT 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 742
BspPI GGATC 1 cut(s) 507
BspQI GCTCTTC 1 cut(s) 845
BspT107I GGYRCC 1 cut(s) 740
BsrI ACTGG 2 cut(s) 414, 873
BssMI GATC 4 cut(s) 21, 512, 807, 834
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 4 cut(s) 211, 691, 769, 831
Bst6I CTCTTC 1 cut(s) 845
BstAPI GCANNNNNTGC 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 756, 776
BstF5I GGATG 2 cut(s) 318, 454
BstKTI GATC 4 cut(s) 24, 515, 810, 837
BstMBI GATC 4 cut(s) 21, 512, 807, 834
BstMWI GCNNNNNNNGC 3 cut(s) 351, 575, 852
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 2 cut(s) 94, 103
BstSFI CTRYAG 1 cut(s) 582
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 4 cut(s) 15, 181, 363, 465
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
Bsu15I ATCGAT 1 cut(s) 396
BsuI GTATCC 1 cut(s) 819
BsuRI GGCC 1 cut(s) 712
BsuTUI ATCGAT 1 cut(s) 396
BtgZI GCGATG 1 cut(s) 471
BtsCI GGATG 2 cut(s) 318, 454
BtsI GCAGTG 2 cut(s) 448, 498
BtsIMutI CAGTG 4 cut(s) 216, 421, 448, 498
Cac8I GCNNGC 2 cut(s) 756, 776
Cfr13I GGNCC 1 cut(s) 540
ClaI ATCGAT 1 cut(s) 396
Csp6I GTAC 2 cut(s) 367, 485
CviAII CATG 1 cut(s) 203
CviQI GTAC 2 cut(s) 367, 485
DpnI GATC 4 cut(s) 23, 514, 809, 836
DpnII GATC 4 cut(s) 21, 512, 807, 834
Eam1104I CTCTTC 1 cut(s) 845
EarI CTCTTC 1 cut(s) 845
Eco147I AGGCCT 1 cut(s) 712
Eco47I GGWCC 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 805
EcoRII CCWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 206
FaqI GGGAC 2 cut(s) 440, 773
FatI CATG 1 cut(s) 202
FauI CCCGC 1 cut(s) 799
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 5 cut(s) 29, 195, 352, 454, 494
FokI GGATG 2 cut(s) 325, 461
Fsp4HI GCNGC 5 cut(s) 29, 195, 352, 454, 494
FspBI CTAG 4 cut(s) 363, 408, 510, 879
GluI GCNGC 5 cut(s) 29, 195, 352, 454, 494
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 712
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 1 cut(s) 528
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 591, 706
Hpy188I TCNGA 2 cut(s) 46, 131
Hpy188III TCNNGA 6 cut(s) 77, 111, 166, 703, 823, 905
Hpy8I GTNNAC 2 cut(s) 591, 706
Hpy99I CGWCG 2 cut(s) 374, 434
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 4 cut(s) 211, 691, 769, 831
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 3 cut(s) 179, 202, 778
HpyF10VI GCNNNNNNNGC 3 cut(s) 351, 575, 852
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 4 cut(s) 21, 512, 807, 834
LguI GCTCTTC 1 cut(s) 845
LmnI GCTCC 2 cut(s) 79, 669
Lsp1109I GCAGC 4 cut(s) 15, 181, 363, 465
LweI GCATC 2 cut(s) 402, 615
MaeI CTAG 4 cut(s) 363, 408, 510, 879
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 685
MalI GATC 4 cut(s) 23, 514, 809, 836
MboI GATC 4 cut(s) 21, 512, 807, 834
MboII GAAGA 4 cut(s) 488, 491, 811, 862
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 7 cut(s) 84, 136, 242, 375, 625, 746, 761
MlyI GAGTC 1 cut(s) 537
MnlI CCTC 1 cut(s) 439
MseI TTAA 2 cut(s) 653, 815
MslI CAYNNNNRTG 2 cut(s) 548, 584
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 96, 105
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 3 cut(s) 351, 575, 852
NciI CCSGG 1 cut(s) 105
NdeII GATC 4 cut(s) 21, 512, 807, 834
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 742
OliI CACNNNNGTG 1 cut(s) 584
PceI AGGCCT 1 cut(s) 712
PciSI GCTCTTC 1 cut(s) 845
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 5 cut(s) 30, 196, 353, 455, 495
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PshBI ATTAAT 1 cut(s) 815
PsiI TTATAA 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 742
PspPI GGNCC 1 cut(s) 540
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 2 cut(s) 368, 486
RsaNI GTAC 2 cut(s) 367, 485
RseI CAYNNNNRTG 2 cut(s) 548, 584
SapI GCTCTTC 1 cut(s) 845
SaqAI TTAA 2 cut(s) 653, 815
SatI GCNGC 5 cut(s) 29, 195, 352, 454, 494
Sau3AI GATC 4 cut(s) 21, 512, 807, 834
Sau96I GGNCC 1 cut(s) 540
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 2 cut(s) 96, 105
SduI GDGCHC 1 cut(s) 745
SetI ASST 9 cut(s) 30, 51, 76, 277, 297, 339, 368, 406, 599
SfaNI GCATC 2 cut(s) 402, 615
SfcI CTRYAG 1 cut(s) 582
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 2 cut(s) 548, 584
Sse9I AATT 7 cut(s) 84, 136, 242, 375, 625, 746, 761
SseBI AGGCCT 1 cut(s) 712
SsiI CCGC 4 cut(s) 299, 494, 516, 792
SspMI CTAG 4 cut(s) 363, 408, 510, 879
StuI AGGCCT 1 cut(s) 712
StyD4I CCNGG 2 cut(s) 94, 103
TaaI ACNGT 4 cut(s) 211, 691, 769, 831
TaiI ACGT 1 cut(s) 406
TaqI TCGA 3 cut(s) 24, 396, 833
TasI AATT 7 cut(s) 84, 136, 242, 375, 625, 746, 761
TauI GCSGC 1 cut(s) 496
Tru1I TTAA 2 cut(s) 653, 815
Tru9I TTAA 2 cut(s) 653, 815
TscAI CASTG 4 cut(s) 216, 421, 448, 505
TseI GCWGC 4 cut(s) 28, 194, 351, 453
TspDTI ATGAA 5 cut(s) 219, 273, 414, 474, 489
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 4 cut(s) 216, 421, 448, 505
VpaK11BI GGWCC 1 cut(s) 540
VspI ATTAAT 1 cut(s) 815
XmiI GTMKAC 1 cut(s) 590
XspI CTAG 4 cut(s) 363, 408, 510, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.