Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

653196 .. 655762

Gene Structure 2567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCGTGGAAGAATGCGTTCGACAAGGCGAAGCCAGTGTTCGTGACGATATACGCCACCGTAATAATTGGGATCGTCTTCTCGTCTTTGTATGTGATATCCGCCATCTACTCCGGCAAGTCAGCCGCTGATTCCACCACCTCCTGGCTTTCCCATGTAGGTTCTCCTCCTTTAGAGCAAGCACCCAATGTTTCTCAACCAGAAATAGTTCAAGCAATGGCCACACCTTCAGTAGGGCCTCAAAGCATGTCAACAAGACCTATTTGGGAAGCTCCCCCACGCACAAAGAAAATGCCACCTTTGAAGAAATTTAGACTGAGCAAAGAACTAGTTCAGCAAAGAGTGAAGGATAACGTTGTTATAGTGACCTTTGGGAACTATGCATTCATGGATTTTATCCTGACTTGGGTTAAACACTTGACTGATCTGGGGCTTTCTAACCTTCTCATTGGTGCAATGGACACCAAACTGTTGGAGGCTTTGTATTGGAAAGGTGTTCCGGTGTTTGACATGGGCAGCCACATGAGCACAATAGACGTTGGATGGGGGTCGCCAACATTCCACAAGATGGGACGAGAAAAAGTTATACTGATAGACTCAATTCTCCCTTATGGTTTTGAGCTATTGATGTGTGATACAGACATGGTTTGGTTGAAGGACCCACTTCCGTATCTTGCTCGCTATGCAGAAGCAGATGTCTTAACTTCCAGTGATCAAGTTGTACCAACGGTCACCGATGACAGGCTGGACATTTGGCAACAAGTTGGTGCTGCGTACAACATTGGAATTTTTCACTGGCGGCCAACAGATCGATCAGCTAAAAGATTGGCTAAGGAATGGAAAGATATGCTTCTAGCTGATGAGAAGATATGGGACCAGAATGGGTTTAATCGATCTCGTACGAAGACAGTTAGGGCCACCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006464 GO:0006486 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009664 GO:0009832 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0019538 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0036211 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0052325 GO:0052546 GO:0052636 GO:0070085 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

309

Amino Acids

34.68

Weight (kDa)

8.77

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	145 - 304	9.8e-38	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	144, 568
AciI	CCGC	3 cut(s)	102, 126, 799
AclI	AACGTT	1 cut(s)	354
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	2 cut(s)	219, 800
AcsI	RAATTY	2 cut(s)	308, 786
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	3 cut(s)	723, 776, 901
AfiI	CCNNNNNNNGG	5 cut(s)	144, 233, 406, 568, 741
AgsI	TTSAA	3 cut(s)	212, 304, 655
AhlI	ACTAGT	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	4 cut(s)	272, 622, 818, 857
AluI	AGCT	4 cut(s)	272, 622, 818, 857
Alw21I	GWGCWC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	4 cut(s)	219, 236, 800, 915
ApeKI	GCWGC	2 cut(s)	516, 770
ApoI	RAATTY	2 cut(s)	308, 786
Asp700I	GAANNNNTTC	3 cut(s)	17, 207, 330
AspS9I	GGNCC	4 cut(s)	236, 658, 874, 915
AsuHPI	GGTGA	1 cut(s)	724
AvaII	GGWCC	2 cut(s)	658, 874
BaeI	ACNNNNGTAYC	2 cut(s)	653, 686
BalI	TGGCCA	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	70, 911
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	2 cut(s)	528, 757
BccI	CCATC	3 cut(s)	113, 537, 562
BciT130I	CCWGG	1 cut(s)	145
BclI	TGATCA	1 cut(s)	712
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	2 cut(s)	329, 854
BisI	GCNGC	4 cut(s)	126, 517, 771, 800
BlsI	GCNGC	4 cut(s)	127, 518, 772, 801
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	2 cut(s)	658, 874
BmgT120I	GGNCC	4 cut(s)	236, 658, 874, 915
BmiI	GGNNCC	2 cut(s)	660, 875
BmrFI	CCNGG	1 cut(s)	145
BpiI	GAAGAC	2 cut(s)	70, 911
Bpu10I	CCTNAGC	1 cut(s)	831
Bsa29I	ATCGAT	2 cut(s)	811, 892
BsaWI	WCCGGW	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	5 cut(s)	144, 233, 406, 568, 741
Bse1I	ACTGG	4 cut(s)	35, 708, 800, 921
Bse3DI	GCAATG	2 cut(s)	222, 462
BseBI	CCWGG	1 cut(s)	145
BseCI	ATCGAT	2 cut(s)	811, 892
BseGI	GGATG	1 cut(s)	548
BseLI	CCNNNNNNNGG	5 cut(s)	144, 233, 406, 568, 741
BseMI	GCAATG	2 cut(s)	222, 462
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	4 cut(s)	35, 708, 800, 921
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	528, 757
BshFI	GGCC	4 cut(s)	221, 238, 802, 917
BshVI	ATCGAT	2 cut(s)	811, 892
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	2 cut(s)	114, 500
BsiWI	CGTACG	1 cut(s)	899
BslFI	GGGAC	2 cut(s)	585, 887
BslI	CCNNNNNNNGG	5 cut(s)	144, 233, 406, 568, 741
BsmFI	GGGAC	2 cut(s)	585, 887
BsmI	GAATGC	2 cut(s)	19, 383
BsnI	GGCC	4 cut(s)	221, 238, 802, 917
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	6 cut(s)	72, 424, 712, 808, 812, 893
BspACI	CCGC	3 cut(s)	102, 126, 799
BspANI	GGCC	4 cut(s)	221, 238, 802, 917
BspCNI	CTCAG	1 cut(s)	309
BspDI	ATCGAT	2 cut(s)	811, 892
BspLI	GGNNCC	2 cut(s)	660, 875
BspPI	GGATC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	222, 462
BsrI	ACTGG	4 cut(s)	35, 708, 800, 921
BssMI	GATC	6 cut(s)	72, 424, 712, 808, 812, 893
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	4 cut(s)	61, 471, 730, 910
BstC8I	GCNNGC	2 cut(s)	180, 679
BstDEI	CTNAG	2 cut(s)	317, 831
BstEII	GGTNACC	1 cut(s)	730
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	548
BstKTI	GATC	6 cut(s)	75, 427, 715, 811, 815, 896
BstMBI	GATC	6 cut(s)	72, 424, 712, 808, 812, 893
BstMWI	GCNNNNNNNGC	2 cut(s)	525, 683
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	250
BstPI	GGTNACC	1 cut(s)	730
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	528, 757
BstV2I	GAAGAC	2 cut(s)	70, 911
BstXI	CCANNNNNNTGG	1 cut(s)	472
Bsu15I	ATCGAT	2 cut(s)	811, 892
BsuRI	GGCC	4 cut(s)	221, 238, 802, 917
BsuTUI	ATCGAT	2 cut(s)	811, 892
BtsCI	GGATG	1 cut(s)	548
BtsIMutI	CAGTG	3 cut(s)	42, 715, 793
Cac8I	GCNNGC	2 cut(s)	180, 679
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr13I	GGNCC	4 cut(s)	236, 658, 874, 915
ClaI	ATCGAT	2 cut(s)	811, 892
Csp6I	GTAC	3 cut(s)	722, 775, 900
CviAII	CATG	6 cut(s)	155, 247, 388, 511, 523, 643
CviQI	GTAC	3 cut(s)	722, 775, 900
DdeI	CTNAG	2 cut(s)	317, 831
DpnI	GATC	6 cut(s)	74, 426, 714, 810, 814, 895
DpnII	GATC	6 cut(s)	72, 424, 712, 808, 812, 893
EaeI	YGGCCR	2 cut(s)	219, 800
EciI	GGCGGA	1 cut(s)	91
Eco32I	GATATC	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	658, 874
Eco57I	CTGAAG	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	730
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoO109I	RGGNCCY	2 cut(s)	236, 658
EcoO65I	GGTNACC	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	385
FaeI	CATG	6 cut(s)	158, 250, 391, 514, 526, 646
FalI	AAGNNNNNCTT	2 cut(s)	834, 866
FaqI	GGGAC	2 cut(s)	585, 887
FatI	CATG	6 cut(s)	154, 246, 387, 510, 522, 642
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	4 cut(s)	126, 517, 771, 800
FokI	GGATG	1 cut(s)	555
Fsp4HI	GCNGC	4 cut(s)	126, 517, 771, 800
FspBI	CTAG	2 cut(s)	329, 854
GluI	GCNGC	4 cut(s)	126, 517, 771, 800
HaeIII	GGCC	4 cut(s)	221, 238, 802, 917
HapII	CCGG	2 cut(s)	114, 500
Hin1II	CATG	6 cut(s)	158, 250, 391, 514, 526, 646
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	2 cut(s)	131, 596
HpaII	CCGG	2 cut(s)	114, 500
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188III	TCNNGA	2 cut(s)	43, 400
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	4 cut(s)	237, 340, 452, 649
HpyCH4III	ACNGT	4 cut(s)	61, 471, 730, 910
HpyCH4IV	ACGT	2 cut(s)	354, 537
HpyCH4V	TGCA	3 cut(s)	383, 455, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	525, 683
HpyF3I	CTNAG	2 cut(s)	317, 831
HpySE526I	ACGT	2 cut(s)	354, 537
Hsp92II	CATG	6 cut(s)	158, 250, 391, 514, 526, 646
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	6 cut(s)	72, 424, 712, 808, 812, 893
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	2 cut(s)	528, 757
MaeI	CTAG	2 cut(s)	329, 854
MaeII	ACGT	2 cut(s)	354, 537
MaeIII	GTNAC	3 cut(s)	43, 364, 730
MalI	GATC	6 cut(s)	74, 426, 714, 810, 814, 895
MboI	GATC	6 cut(s)	72, 424, 712, 808, 812, 893
MboII	GAAGA	5 cut(s)	22, 70, 316, 877, 916
MhlI	GDGCHC	1 cut(s)	530
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	4 cut(s)	66, 308, 600, 786
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	2 cut(s)	453, 520
MnlI	CCTC	4 cut(s)	151, 177, 249, 469
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	385
MroXI	GAANNNNTTC	3 cut(s)	17, 207, 330
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	3 cut(s)	411, 701, 888
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	2 cut(s)	114, 500
MspR9I	CCNGG	1 cut(s)	145
Mva1269I	GAATGC	2 cut(s)	19, 383
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	525, 683
NdeII	GATC	6 cut(s)	72, 424, 712, 808, 812, 893
NlaIII	CATG	6 cut(s)	158, 250, 391, 514, 526, 646
NlaIV	GGNNCC	2 cut(s)	660, 875
NmuCI	GTSAC	3 cut(s)	43, 364, 730
NsiI	ATGCAT	1 cut(s)	385
NspI	RCATGY	1 cut(s)	250
PctI	GAATGC	2 cut(s)	19, 383
PdmI	GAANNNNTTC	3 cut(s)	17, 207, 330
PfeI	GAWTC	1 cut(s)	131
Pfl23II	CGTACG	1 cut(s)	899
PflMI	CCANNNNNTGG	2 cut(s)	144, 568
PkrI	GCNGC	4 cut(s)	127, 518, 772, 801
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PpuMI	RGGWCCY	1 cut(s)	658
Psp1406I	AACGTT	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	143
PspEI	GGTNACC	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	143
PspLI	CGTACG	1 cut(s)	899
PspN4I	GGNNCC	2 cut(s)	660, 875
PspPI	GGNCC	4 cut(s)	236, 658, 874, 915
PspPPI	RGGWCCY	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	128
RsaI	GTAC	3 cut(s)	723, 776, 901
RsaNI	GTAC	3 cut(s)	722, 775, 900
SaqAI	TTAA	3 cut(s)	411, 701, 888
SatI	GCNGC	4 cut(s)	126, 517, 771, 800
Sau3AI	GATC	6 cut(s)	72, 424, 712, 808, 812, 893
Sau96I	GGNCC	4 cut(s)	236, 658, 874, 915
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	530
SinI	GGWCC	2 cut(s)	658, 874
SpeI	ACTAGT	1 cut(s)	328
Sse9I	AATT	4 cut(s)	66, 308, 600, 786
SsiI	CCGC	3 cut(s)	102, 126, 799
SspMI	CTAG	2 cut(s)	329, 854
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	4 cut(s)	61, 471, 730, 910
TaiI	ACGT	2 cut(s)	357, 540
TaqI	TCGA	3 cut(s)	21, 811, 892
TasI	AATT	4 cut(s)	66, 308, 600, 786
TauI	GCSGC	2 cut(s)	128, 802
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	3 cut(s)	411, 701, 888
Tru9I	TTAA	3 cut(s)	411, 701, 888
TscAI	CASTG	3 cut(s)	42, 715, 800
TseFI	GTSAC	3 cut(s)	43, 364, 730
TseI	GCWGC	2 cut(s)	516, 770
Tsp45I	GTSAC	3 cut(s)	43, 364, 730
TspDTI	ATGAA	1 cut(s)	376
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	3 cut(s)	42, 715, 800
Van91I	CCANNNNNTGG	2 cut(s)	144, 568
VpaK11BI	GGWCC	2 cut(s)	658, 874
XagI	CCTNNNNNAGG	1 cut(s)	231
XapI	RAATTY	2 cut(s)	308, 786
XceI	RCATGY	1 cut(s)	250
XmnI	GAANNNNTTC	3 cut(s)	17, 207, 330
XspI	CTAG	2 cut(s)	329, 854
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.