pycom06g00870

Cell division cycle protein 48 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
826692 .. 827096
405 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGCCTCAACTCCGTGAATTGGTCGAGCTGCCCCTAAGTTCTTCTCAGCTTTTTACATCAATCAGTGTGAAAGCTCCAAACAGAATTATGCTTTCTGGACCCATCGGTTCAGGAAAGGCGCTAATAATTAGAGATAATCATGGGTATGTTGGTGGAACAAATGAACACTTCCAGAATGTTCTTGGAACAAACAATCTGTCTGCTTTGCTTGAAACAGTGGGTGTTTTTCGTATTTCTTTTCTGATTTGTTATCCTTGTGTGGTTTTCCTGTATAAATCAAATCTGTTAGATAGTCTTCCTTTTATGTATGCATTGTATAGAAAGTATACTTGTACATCAAGGCTTTGTAATCAAGCCTCAAATAATCGAGGAATTCAGTTACATACCTTCTATTCTCTTCTCTAG

Protein Analysis

135

Amino Acids

15.0

Weight (kDa)

9.21

Isoelectric Point (pI)

26.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029292)

Species Orthologous Gene IDs
pyrus_communis pycom06g00680 pycom06g00870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 372
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 3 cut(s) 28, 49, 74
AluI AGCT 3 cut(s) 28, 49, 74
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 372
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 15
BccI CCATC 1 cut(s) 110
BfaI CTAG 1 cut(s) 403
BfoI RGCGCY 1 cut(s) 122
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 19
Bsp1407I TGTACA 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 332
BssNAI GTATAC 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 402
BstAUI TGTACA 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 35, 45
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 287
BstZ17I GTATAC 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 70, 222
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 333
CviAII CATG 1 cut(s) 140
CviJI RGCY 5 cut(s) 28, 49, 74, 343, 356
CviKI_1 RGCY 5 cut(s) 28, 49, 74, 343, 356
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 2 cut(s) 35, 45
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 1 cut(s) 143
FaiI YATR 9 cut(s) 89, 141, 147, 273, 305, 309, 318, 327, 384
FatI CATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 1 cut(s) 403
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 122
HhaI GCGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 3 cut(s) 96, 111, 172
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 35, 45
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 81, 96, 185, 281
Lsp1109I GCAGC 1 cut(s) 15
MaeI CTAG 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 378
MboII GAAGA 3 cut(s) 33, 287, 389
MluCI AATT 4 cut(s) 17, 84, 126, 372
MnlI CCTC 3 cut(s) 15, 362, 367
Mph1103I ATGCAT 1 cut(s) 313
MslI CAYNNNNRTG 1 cut(s) 144
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 313
PkrI GCNGC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 98
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 144
SatI GCNGC 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 98
SetI ASST 4 cut(s) 30, 51, 76, 389
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 4 cut(s) 17, 84, 126, 372
SspMI CTAG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 2 cut(s) 24, 367
TasI AATT 4 cut(s) 17, 84, 126, 372
TatI WGTACW 1 cut(s) 332
TscAI CASTG 2 cut(s) 70, 222
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 70, 222
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 372
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 1 cut(s) 403
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.