pycom06g01070

RING-like zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
1073614 .. 1075759
2146 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGGGATCGAGTGGCAGCAAAGCGACGTCGTCGTCAGCGGCGGCATTATCTTCCTCGACGTCGTCGTTTGGTGGAAATGGCCGGAGCCGGAGGTGTCGATCCAAATCCAAATGCCGCAGACTGTTCAAATCGTATTCTTGTTTGGGACTAGGAACCAAATCTCGATCTCACGACAGCGACGACGAACACCAGGTTTGTGATCGATCGGAACAAAGAAATCAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.01

Weight (kDa)

10.06

Isoelectric Point (pI)

79.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
AatII GACGTC 2 cut(s) 29, 62
AciI CCGC 3 cut(s) 38, 41, 115
AclWI GGATC 2 cut(s) 13, 93
AcoI YGGCCR 1 cut(s) 79
AcyI GRCGYC 2 cut(s) 26, 59
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 189
AlwI GGATC 2 cut(s) 13, 93
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 191
BfaI CTAG 1 cut(s) 149
BisI GCNGC 4 cut(s) 16, 39, 42, 115
BlsI GCNGC 4 cut(s) 17, 40, 43, 116
Bme1390I CCNGG 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 86, 154
BmrFI CCNGG 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 103
BsaHI GRCGYC 2 cut(s) 26, 59
Bse8I GATNNNNATC 1 cut(s) 103
BseBI CCWGG 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 202
BseJI GATNNNNATC 1 cut(s) 103
BseXI GCAGC 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 81
BshVI ATCGAT 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 206
BsiSI CCGG 2 cut(s) 82, 88
BslFI GGGAC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 81
Bsp143I GATC 5 cut(s) 5, 98, 164, 199, 203
BspACI CCGC 3 cut(s) 38, 41, 115
BspANI GGCC 1 cut(s) 81
BspDI ATCGAT 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 86, 154
BspPI GGATC 2 cut(s) 13, 93
BssMI GATC 5 cut(s) 5, 98, 164, 199, 203
BssNI GRCGYC 2 cut(s) 26, 59
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 123
BstACI GRCGYC 2 cut(s) 26, 59
BstKTI GATC 5 cut(s) 8, 101, 167, 202, 206
BstMBI GATC 5 cut(s) 5, 98, 164, 199, 203
BstMCI CGRYCG 1 cut(s) 206
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 27
Bsu15I ATCGAT 1 cut(s) 202
BsuRI GGCC 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 202
ClaI ATCGAT 1 cut(s) 202
CsiI ACCWGGT 1 cut(s) 189
CviJI RGCY 2 cut(s) 81, 87
CviKI_1 RGCY 2 cut(s) 81, 87
DpnI GATC 5 cut(s) 7, 100, 166, 201, 205
DpnII GATC 5 cut(s) 5, 98, 164, 199, 203
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 189
FaqI GGGAC 1 cut(s) 159
Fnu4HI GCNGC 4 cut(s) 16, 39, 42, 115
Fsp4HI GCNGC 4 cut(s) 16, 39, 42, 115
FspBI CTAG 1 cut(s) 149
GluI GCNGC 4 cut(s) 16, 39, 42, 115
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 82, 88
Hin1I GRCGYC 2 cut(s) 26, 59
HpaII CCGG 2 cut(s) 82, 88
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 162, 170
Hpy99I CGWCG 8 cut(s) 28, 31, 34, 61, 64, 67, 182, 185
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4IV ACGT 2 cut(s) 26, 59
HpySE526I ACGT 2 cut(s) 26, 59
Hsp92I GRCGYC 2 cut(s) 26, 59
Kzo9I GATC 5 cut(s) 5, 98, 164, 199, 203
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 5 cut(s) 95, 101, 176, 203, 206
Lsp1109I GCAGC 1 cut(s) 27
MabI ACCWGGT 1 cut(s) 189
MaeI CTAG 1 cut(s) 149
MaeII ACGT 2 cut(s) 26, 59
MalI GATC 5 cut(s) 7, 100, 166, 201, 205
MboI GATC 5 cut(s) 5, 98, 164, 199, 203
MboII GAAGA 1 cut(s) 42
MnlI CCTC 2 cut(s) 64, 84
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 2 cut(s) 82, 88
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
NdeII GATC 5 cut(s) 5, 98, 164, 199, 203
NlaIV GGNNCC 2 cut(s) 86, 154
PcsI WCGNNNNNNNCGW 2 cut(s) 62, 177
PflFI GACNNNGTC 2 cut(s) 28, 61
PkrI GCNGC 4 cut(s) 17, 40, 43, 116
Ple19I CGATCG 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 86, 154
PsyI GACNNNGTC 2 cut(s) 28, 61
PvuI CGATCG 1 cut(s) 206
SatI GCNGC 4 cut(s) 16, 39, 42, 115
Sau3AI GATC 5 cut(s) 5, 98, 164, 199, 203
ScrFI CCNGG 1 cut(s) 191
SetI ASST 4 cut(s) 29, 62, 95, 195
SexAI ACCWGGT 1 cut(s) 189
SsiI CCGC 3 cut(s) 38, 41, 115
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 123
TaiI ACGT 2 cut(s) 29, 62
TaqI TCGA 5 cut(s) 8, 56, 97, 163, 202
TauI GCSGC 3 cut(s) 41, 44, 117
TseI GCWGC 1 cut(s) 15
Tth111I GACNNNGTC 2 cut(s) 28, 61
XspI CTAG 1 cut(s) 149
ZraI GACGTC 2 cut(s) 27, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.