Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1334935 .. 1335611

Gene Structure 677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATACGAGTGAAGCCCTCAAGATGGCTAGTTGTAAATCTACACAATGTGGACTGGAATTTGTATCTCAACACTCTCCTTTGGAATCTCAACTATTGGGACTCGATAAGTACACTTGCCGGAGAGGTAGAAAACCCAAAGAAAACTCTCCCAAAGGCTCTGTTTTATGCTTTGATATTAGTTGTTCTTGGATATCTTTTCCCACCCTTAATGGGTACTGGGGCTGTTCCACTCGACCGTGACTTGTGGACCGATGGATATTTCTCAGACATTGCCAAAATAATTGGGGGAGTTTGGTTGAGATGGTGGATCCAAGGGGCTGCAGCAGTGTCGAACATGGGGATGTTTGTTGCTGAAATGAGCAGTTTTGGTGAGCGTTCTCGTCATGGAACCCAAGTAATTGGCATTTTGTTCTCAGCTTCTGGGGTCCTTTCGCTATCTTGGTTGAGCTTTCAAGAGATTGTAGCCGCAGAAAACTTCTTGTACTGTTTTGGGATGATCTTGGAGTTTATATCGTTGATACGGTTAAGAGTGAAGTACCCAGCTACATCTCGTCCTTACAAGATAATTTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006082 GO:0006520 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0006928 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0016477 GO:0019752 GO:0022607 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048870 GO:0050900 GO:0051179 GO:0051234 GO:0051674 GO:0055085 GO:0065003 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098656 GO:1901564 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

193

Amino Acids

21.84

Weight (kDa)

9.04

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	19 - 117	2.6e-07	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	2 cut(s)	304, 317
AcsI	RAATTY	1 cut(s)	58
AdeI	CACNNNGTG	1 cut(s)	49
AfaI	GTAC	4 cut(s)	112, 217, 485, 539
AfiI	CCNNNNNNNGG	2 cut(s)	24, 212
AgsI	TTSAA	1 cut(s)	455
AluBI	AGCT	3 cut(s)	419, 450, 545
AluI	AGCT	3 cut(s)	419, 450, 545
AlwI	GGATC	2 cut(s)	304, 317
AlwNI	CAGNNNCTG	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	320, 323
ApoI	RAATTY	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	249, 427
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	249, 427
BamHI	GGATCC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	307, 335
BccI	CCATC	3 cut(s)	18, 248, 297
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	3 cut(s)	321, 324, 468
BlsI	GCNGC	3 cut(s)	322, 325, 469
Bme18I	GGWCC	2 cut(s)	249, 427
BmgT120I	GGNCC	2 cut(s)	249, 427
BmiI	GGNNCC	3 cut(s)	311, 391, 428
BmrI	ACTGGG	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	4
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 212
Bse1I	ACTGG	2 cut(s)	59, 223
Bse3DI	GCAATG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	348, 501
BseLI	CCNNNNNNNGG	2 cut(s)	24, 212
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	279, 429
BseNI	ACTGG	2 cut(s)	59, 223
BseXI	GCAGC	2 cut(s)	307, 335
BseYI	CCCAGC	1 cut(s)	541
Bsh1285I	CGRYCG	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	24, 212
BsmFI	GGGAC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	309, 498
BspACI	CCGC	1 cut(s)	468
BspCNI	CTCAG	2 cut(s)	278, 428
BspLI	GGNNCC	3 cut(s)	311, 391, 428
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	2 cut(s)	304, 317
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	59, 223
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	2 cut(s)	309, 498
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	239, 488, 525
BstDEI	CTNAG	2 cut(s)	265, 415
BstF5I	GGATG	2 cut(s)	348, 501
BstKTI	GATC	2 cut(s)	312, 501
BstMBI	GATC	2 cut(s)	309, 498
BstMCI	CGRYCG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	307, 335
BstX2I	RGATCY	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	348, 501
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	422
Cfr13I	GGNCC	2 cut(s)	249, 427
Csp6I	GTAC	4 cut(s)	111, 216, 484, 538
CviAII	CATG	2 cut(s)	337, 386
CviJI	RGCY	9 cut(s)	16, 28, 158, 224, 320, 419, 450, 467, 545
CviKI_1	RGCY	9 cut(s)	16, 28, 158, 224, 320, 419, 450, 467, 545
CviQI	GTAC	4 cut(s)	111, 216, 484, 538
DdeI	CTNAG	2 cut(s)	265, 415
DpnI	GATC	2 cut(s)	311, 500
DpnII	GATC	2 cut(s)	309, 498
DraIII	CACNNNGTG	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	249, 427
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	2 cut(s)	340, 389
FaiI	YATR	4 cut(s)	168, 338, 387, 512
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	2 cut(s)	336, 385
Fnu4HI	GCNGC	3 cut(s)	321, 324, 468
FokI	GGATG	2 cut(s)	355, 508
Fsp4HI	GCNGC	3 cut(s)	321, 324, 468
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	3 cut(s)	321, 324, 468
GsaI	CCCAGC	1 cut(s)	545
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	2 cut(s)	340, 389
HinfI	GANTC	2 cut(s)	85, 101
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	3 cut(s)	52, 113, 249
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	21, 455
Hpy8I	GTNNAC	3 cut(s)	52, 113, 249
HpyCH4III	ACNGT	3 cut(s)	239, 488, 525
HpyCH4V	TGCA	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	265, 415
Hsp92II	CATG	2 cut(s)	340, 389
Kzo9I	GATC	2 cut(s)	309, 498
LpnPI	CCDG	5 cut(s)	40, 133, 204, 408, 555
Lsp1109I	GCAGC	2 cut(s)	307, 335
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	311, 500
MboI	GATC	2 cut(s)	309, 498
MflI	RGATCY	1 cut(s)	309
MluCI	AATT	4 cut(s)	58, 282, 399, 567
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	2 cut(s)	28, 118
MseI	TTAA	3 cut(s)	209, 527, 577
MslI	CAYNNNNRTG	1 cut(s)	341
MspI	CCGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	309, 498
NlaIII	CATG	2 cut(s)	340, 389
NlaIV	GGNNCC	3 cut(s)	311, 391, 428
NmuCI	GTSAC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	322, 325, 469
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	541
PspN4I	GGNNCC	3 cut(s)	311, 391, 428
PspPI	GGNCC	2 cut(s)	249, 427
PspPPI	RGGWCCY	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	4 cut(s)	112, 217, 485, 539
RsaNI	GTAC	4 cut(s)	111, 216, 484, 538
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	3 cut(s)	209, 527, 577
SatI	GCNGC	3 cut(s)	321, 324, 468
Sau3AI	GATC	2 cut(s)	309, 498
Sau96I	GGNCC	2 cut(s)	249, 427
SchI	GAGTC	1 cut(s)	95
SetI	ASST	4 cut(s)	129, 421, 452, 547
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	2 cut(s)	249, 427
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	4 cut(s)	58, 282, 399, 567
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	3 cut(s)	239, 488, 525
TaqI	TCGA	3 cut(s)	104, 234, 332
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	4 cut(s)	58, 282, 399, 567
TatI	WGTACW	2 cut(s)	110, 483
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	3 cut(s)	209, 527, 577
Tru9I	TTAA	3 cut(s)	209, 527, 577
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	320, 323
Tsp45I	GTSAC	1 cut(s)	239
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	2 cut(s)	249, 427
XapI	RAATTY	1 cut(s)	58
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.