pycom06g01620

3,4-dihydroxy-2-butanone kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
1735569 .. 1735859
291 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGCTCCTCCCTCAAACAAGGAAAACCCCATCTACCCTCCTCCAAAACGACATCAAAGGAAACCATCCAAACGGTCTGAACACGAGATTTCGTTCGAATCTCGCCGGATCTGGAGATGAAAACGACGACGATATGTTCGTCCCCGAACTCTACGCTCCATGCCCATCACACTCCGAGCCCCCCGCCATCACCTTTCCGATCGTTGTTTTGATTGTGAAATCGACGGAAGCCATTTTCAACGGCGATGAGCATAGGAATCCGATTGATTCTCGCTGTAGTTCAAAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.57

Weight (kDa)

5.46

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 115
AgsI TTSAA 2 cut(s) 238, 282
AlwI GGATC 1 cut(s) 115
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AsuHPI GGTGA 1 cut(s) 181
AsuII TTCGAA 1 cut(s) 95
BanII GRGCYC 1 cut(s) 180
BauI CACGAG 1 cut(s) 82
BccI CCATC 4 cut(s) 37, 72, 172, 194
BceAI ACGGC 1 cut(s) 256
BfmI CTRYAG 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 95
BseGI GGATG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 107, 198
BspACI CCGC 1 cut(s) 183
BspPI GGATC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 95
BssMI GATC 2 cut(s) 107, 198
BssSI CACGAG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 95
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 2 cut(s) 110, 201
BstMBI GATC 2 cut(s) 107, 198
BstMCI CGRYCG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 258
BtsCI GGATG 1 cut(s) 64
CviAII CATG 1 cut(s) 159
CviJI RGCY 2 cut(s) 178, 230
CviKI_1 RGCY 2 cut(s) 178, 230
DpnI GATC 2 cut(s) 109, 200
DpnII GATC 2 cut(s) 107, 198
Eco24I GRGCYC 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 1 cut(s) 162
FaiI YATR 4 cut(s) 134, 160, 252, 289
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 158
FauI CCCGC 1 cut(s) 190
FokI GGATG 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 132
HapII CCGG 1 cut(s) 105
Hin1II CATG 1 cut(s) 162
HinfI GANTC 3 cut(s) 97, 256, 266
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 4 cut(s) 78, 175, 198, 261
Hpy188III TCNNGA 1 cut(s) 111
Hpy99I CGWCG 3 cut(s) 128, 131, 226
HpyCH4III ACNGT 1 cut(s) 74
Hsp92II CATG 1 cut(s) 162
Kzo9I GATC 2 cut(s) 107, 198
LmnI GCTCC 2 cut(s) 9, 160
LpnPI CCDG 2 cut(s) 96, 118
MalI GATC 2 cut(s) 109, 200
MboI GATC 2 cut(s) 107, 198
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 180
MnlI CCTC 4 cut(s) 17, 21, 47, 50
MspI CCGG 1 cut(s) 105
NdeII GATC 2 cut(s) 107, 198
NlaIII CATG 1 cut(s) 162
NspV TTCGAA 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 3 cut(s) 97, 256, 266
Ple19I CGATCG 1 cut(s) 201
PsuI RGATCY 1 cut(s) 107
PvuI CGATCG 1 cut(s) 201
Sau3AI GATC 2 cut(s) 107, 198
SduI GDGCHC 1 cut(s) 180
SetI ASST 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 274
SfuI TTCGAA 1 cut(s) 95
SsiI CCGC 1 cut(s) 183
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 2 cut(s) 95, 221
TfiI GAWTC 3 cut(s) 97, 256, 266
TspDTI ATGAA 1 cut(s) 132
TspGWI ACGGA 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.