Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2393712 .. 2394441

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTTTGAAGTACCAGAGACTCGTGCTACCTTTGAGGAATCCGTTCGCTGTCTGAAGCACAAGGCTTGCGTTGAGAATGTGAGAGCACGTCGACTGGATGATGATGGAGCTGCTGCACTTGTCTTAAGAGAAATGCTCAAGTCAACTAGAACTGCAGAGAAGAAGGTACAAACAGAAAATTCAGTTCCGTTATCTATTAGTACCATCTACGAAGAGGCGATAAACAGCGAAGCTGGTCATAGTTTGACATGGGATCGTGTCAAAGCTGCCCTCAGCTGCCTGTGCGATGGAGAAAGAGATGTGGACGATGAGGATGATGAGTCGGATAGTACGTTGCTCGTTGAAAAGAAGGAAACTCCGGCGATTCTCTATGAGTACGTGCTTCTGGAAAGATTAGTTTTCTTGGCGTGGAAGGTAGATAAGCCCATTGTTTGGAAACATGTTTTGGAAGAGATGTTACACGCCGTATTCCTGACCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

161

Amino Acids

18.25

Weight (kDa)

4.86

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	432
AccI	GTMKAC	1 cut(s)	91
AclWI	GGATC	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	5 cut(s)	12, 168, 202, 331, 377
AfiI	CCNNNNNNNGG	1 cut(s)	432
AflII	CTTAAG	1 cut(s)	124
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	8, 344
AjiI	CACGTC	1 cut(s)	89
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	110, 233, 266, 276
AluI	AGCT	4 cut(s)	110, 233, 266, 276
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	261
ApeKI	GCWGC	4 cut(s)	110, 113, 266, 276
ApoI	RAATTY	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
BauI	CACGAG	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	88
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	4 cut(s)	97, 100, 253, 263
BccI	CCATC	3 cut(s)	98, 212, 281
BceAI	ACGGC	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	153
BfrI	CTTAAG	1 cut(s)	124
BisI	GCNGC	4 cut(s)	111, 114, 267, 277
BlsI	GCNGC	4 cut(s)	112, 115, 268, 278
BmgBI	CACGTC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
Bpu10I	CCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	103, 319
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	4 cut(s)	97, 100, 253, 263
BsgI	GTGCAG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	157
BspPI	GGATC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	253
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
Bst6I	CTCTTC	2 cut(s)	207, 444
BstAFI	CTTAAG	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	103, 319
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	443
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	4 cut(s)	97, 100, 253, 263
BtgZI	GCGATG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	103, 319
Cac8I	GCNNGC	1 cut(s)	67
Csp6I	GTAC	5 cut(s)	11, 167, 201, 330, 376
CviAII	CATG	2 cut(s)	249, 440
CviJI	RGCY	6 cut(s)	65, 110, 233, 266, 276, 424
CviKI_1	RGCY	6 cut(s)	65, 110, 233, 266, 276, 424
CviQI	GTAC	5 cut(s)	11, 167, 201, 330, 376
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	207, 444
EarI	CTCTTC	2 cut(s)	207, 444
Eco57I	CTGAAG	1 cut(s)	74
FaeI	CATG	2 cut(s)	252, 443
FaiI	YATR	4 cut(s)	240, 250, 372, 441
FatI	CATG	2 cut(s)	248, 439
FblI	GTMKAC	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	111, 114, 267, 277
FokI	GGATG	2 cut(s)	110, 326
Fsp4HI	GCNGC	4 cut(s)	111, 114, 267, 277
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	4 cut(s)	111, 114, 267, 277
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	2 cut(s)	252, 443
HincII	GTYRAC	2 cut(s)	92, 144
HindII	GTYRAC	2 cut(s)	92, 144
HinfI	GANTC	4 cut(s)	19, 38, 320, 364
HpaII	CCGG	1 cut(s)	359
Hpy166II	GTNNAC	3 cut(s)	92, 144, 304
Hpy188I	TCNGA	2 cut(s)	54, 325
Hpy188III	TCNNGA	2 cut(s)	386, 472
Hpy8I	GTNNAC	3 cut(s)	92, 144, 304
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	3 cut(s)	157, 343, 406
HpyCH4IV	ACGT	3 cut(s)	88, 332, 378
HpyCH4V	TGCA	2 cut(s)	116, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	3 cut(s)	88, 332, 378
Hsp92II	CATG	2 cut(s)	252, 443
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	6 cut(s)	27, 80, 219, 293, 371, 372
Lsp1109I	GCAGC	4 cut(s)	97, 100, 253, 263
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	3 cut(s)	88, 332, 378
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	3 cut(s)	172, 224, 461
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	13, 329
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	4 cut(s)	28, 208, 281, 304
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	124
MspI	CCGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	282
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	252, 443
NspI	RCATGY	1 cut(s)	443
PciI	ACATGT	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	38, 364
PflMI	CCANNNNNTGG	1 cut(s)	432
PkrI	GCNGC	4 cut(s)	112, 115, 268, 278
PleI	GAGTC	2 cut(s)	13, 328
PpsI	GAGTC	2 cut(s)	13, 328
Ppu21I	YACGTR	1 cut(s)	379
PscI	ACATGT	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	276
RsaI	GTAC	5 cut(s)	12, 168, 202, 331, 377
RsaNI	GTAC	5 cut(s)	11, 167, 201, 330, 376
SalI	GTCGAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	4 cut(s)	111, 114, 267, 277
Sau3AI	GATC	1 cut(s)	253
SchI	GAGTC	2 cut(s)	13, 329
SduI	GDGCHC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	153
SmlI	CTYRAG	2 cut(s)	124, 137
SmoI	CTYRAG	2 cut(s)	124, 137
Sse9I	AATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	147
TaiI	ACGT	3 cut(s)	91, 335, 381
TaqI	TCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	38, 364
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseI	GCWGC	4 cut(s)	110, 113, 266, 276
TspGWI	ACGGA	2 cut(s)	31, 177
Van91I	CCANNNNNTGG	1 cut(s)	432
Vha464I	CTTAAG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.