Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2428343 .. 2428597

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCCCCACTAATGGATTTACTGGGGTCAACTATTGACAGCGATATAGTTTCTTCTTGGCATTCTTTCTCACTGCATTCTAGTGGGCTTTTTGATTCCTGGGAGAAATTGGGCGGTGAACCACTTGTTGGAAAGGAAGGACTGAAGAGGGTTTTACCCATCGGAAATGGCTTTTGGGACCGGTCAATGAAAATCGCGCTAATGGGTATGTTTAATCTGACCCTAGATTGTTTTAGTGATGGAGGAAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003848 GO:0004156 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016772 GO:0016778 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

HPPK Pterin_bind

Protein Analysis

85

Amino Acids

9.2

Weight (kDa)

5.07

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccII	CGCG	1 cut(s)	197
AciI	CCGC	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	13, 128
AgeI	ACCGGT	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	4 cut(s)	111, 143, 157, 189
AoxI	GGCC	1 cut(s)	3
AsiGI	ACCGGT	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	4, 178
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	178
BccI	CCATC	2 cut(s)	167, 233
BciT130I	CCWGG	1 cut(s)	100
BfaI	CTAG	2 cut(s)	81, 224
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	4, 178
BmiI	GGNNCC	2 cut(s)	6, 179
BmrFI	CCNGG	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 128
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	13, 128
BseNI	ACTGG	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	13, 128
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	2 cut(s)	61, 76
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	6, 179
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstUI	CGCG	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	4, 178
CspAI	ACCGGT	1 cut(s)	180
CviJI	RGCY	3 cut(s)	5, 88, 171
CviKI_1	RGCY	3 cut(s)	5, 88, 171
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	98
FaiI	YATR	2 cut(s)	47, 209
FaqI	GGGAC	1 cut(s)	191
FspBI	CTAG	2 cut(s)	81, 224
GlaI	GCGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	30, 119
Hpy188I	TCNGA	2 cut(s)	164, 219
Hpy8I	GTNNAC	2 cut(s)	30, 119
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	76
HspAI	GCGC	1 cut(s)	197
LpnPI	CCDG	4 cut(s)	8, 85, 112, 194
MaeI	CTAG	2 cut(s)	81, 224
MboII	GAAGA	2 cut(s)	45, 157
MluCI	AATT	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	2 cut(s)	141, 236
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	100
Mva1269I	GAATGC	2 cut(s)	61, 76
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	1 cut(s)	197
NlaIV	GGNNCC	2 cut(s)	6, 179
PctI	GAATGC	2 cut(s)	61, 76
PfeI	GAWTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	128
PinAI	ACCGGT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	6, 179
PspPI	GGNCC	2 cut(s)	4, 178
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	213
Sau96I	GGNCC	2 cut(s)	4, 178
ScrFI	CCNGG	1 cut(s)	100
SgeI	CNNG	9 cut(s)	35, 69, 93, 111, 112, 137, 193, 208, 236
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	81, 224
StyD4I	CCNGG	1 cut(s)	98
TasI	AATT	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	178
XspI	CTAG	2 cut(s)	81, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.