Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2428897 .. 2429942

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTTTATAATATAAACGACTCCGATTATCGAAGATTCCTCTTTTCTATCCGCTCCAGCGTCCAGTTCTCCCATCTCCCAACAAGCATGTGCCATTGTAGAATTATTCAATGGATTATCCATTCCAGTTGGCCCATCACAACACCGCCATTGGTGACCTTTGAAGCTTTTTTCGCAGTAATCACCCGCGAAGCTGTCCAGTTCTGCTCGATTGAACTTCCAACTTTGACATTGTGTATTACTTTCACGCATTCATTACCAAATTTCTCCTCAGAAGTTCATTCTCCGGATCAGGAGGTAGTGATTGCTTTGGGAAACAATGTGAGTGACAGACTCTGCATAATTTCAGTGAAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003848 GO:0004156 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016772 GO:0016778 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

HPPK Pterin_bind

Protein Analysis

120

Amino Acids

13.57

Weight (kDa)

6.16

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AccBSI	CCGCTC	1 cut(s)	54
AccII	CGCG	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	3 cut(s)	52, 146, 187
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	262
AgsI	TTSAA	3 cut(s)	110, 164, 215
AluBI	AGCT	2 cut(s)	167, 194
AluI	AGCT	2 cut(s)	167, 194
AlwI	GGATC	1 cut(s)	297
AlwNI	CAGNNNCTG	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	166, 175
BccI	CCATC	2 cut(s)	81, 143
BmgT120I	GGNCC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	286
Bse1I	ACTGG	3 cut(s)	64, 126, 199
BseAI	TCCGGA	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	3 cut(s)	64, 126, 199
BseRI	GAGGAG	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	133
Bsp13I	TCCGGA	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	3 cut(s)	52, 146, 187
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	284
BspEI	TCCGGA	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	189
BspPI	GGATC	1 cut(s)	297
BsrBI	CCGCTC	1 cut(s)	54
BsrI	ACTGG	3 cut(s)	64, 126, 199
BssMI	GATC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	271
BstEII	GGTNACC	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	91
BstPI	GGTNACC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	49
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	4 cut(s)	133, 167, 194, 355
CviKI_1	RGCY	4 cut(s)	133, 167, 194, 355
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
FaeI	CATG	1 cut(s)	91
FaiI	YATR	4 cut(s)	9, 14, 89, 341
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	287
HgaI	GACGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	3 cut(s)	20, 36, 333
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	2 cut(s)	166, 175
Hpy188I	TCNGA	2 cut(s)	25, 274
Hpy188III	TCNNGA	2 cut(s)	287, 293
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	91
Kpn2I	TCCGGA	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	6 cut(s)	70, 77, 139, 212, 278, 300
MaeIII	GTNAC	2 cut(s)	154, 326
MalI	GATC	1 cut(s)	291
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	45
MluCI	AATT	3 cut(s)	102, 262, 342
MlyI	GAGTC	2 cut(s)	14, 327
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	3 cut(s)	50, 280, 289
MroI	TCCGGA	1 cut(s)	286
MseI	TTAA	1 cut(s)	358
MspI	CCGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	250
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	91
NmuCI	GTSAC	2 cut(s)	154, 326
NspI	RCATGY	1 cut(s)	91
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	36
PleI	GAGTC	2 cut(s)	14, 327
PpsI	GAGTC	2 cut(s)	14, 327
PsiI	TTATAA	1 cut(s)	9
PspEI	GGTNACC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	358
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	2 cut(s)	14, 327
SetI	ASST	4 cut(s)	161, 169, 196, 300
Sse9I	AATT	3 cut(s)	102, 262, 342
SsiI	CCGC	3 cut(s)	52, 146, 187
TaqI	TCGA	2 cut(s)	31, 209
TasI	AATT	3 cut(s)	102, 262, 342
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	154, 326
Tsp45I	GTSAC	2 cut(s)	154, 326
TspDTI	ATGAA	2 cut(s)	243, 269
TspRI	CASTG	1 cut(s)	354
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.