Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2588135 .. 2590378

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAACTTCAGAACCCAAGAAGGTCTTGTGAGCAGCTACCATCAGCTCAGTATGGATCGATCGACTACTGTTCAAGATAATAAGGAGTACTACGGCCTCTGGAGCAATTCTTCAAGCAGAGAAGCTTGGGTGCATGCAAACCCAAAAGATTCTGCACCTGCAAATATTATACCATCTCTCGATGATCAGGAGAGGGAGGACACGAACATGATAGATCCAAAAGGATTAAGTTATGAGAAAATATCAGATATAAGCAGCTCCTCAACAACCATTTCAGCTGGAGGGACAAGCCTAACCCCCACGAAACCCAATTTGGAGTTCACTTTGGGCAGGTCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

114

Amino Acids

12.53

Weight (kDa)

5.02

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	166
Acc36I	ACCTGC	2 cut(s)	166, 321
AclWI	GGATC	2 cut(s)	63, 209
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	74, 114
AjuI	GAANNNNNNNTTGG	4 cut(s)	296, 302, 328, 334
AluBI	AGCT	5 cut(s)	36, 46, 125, 258, 278
AluI	AGCT	5 cut(s)	36, 46, 125, 258, 278
AlwI	GGATC	2 cut(s)	63, 209
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	33, 255
BbvI	GCAGC	2 cut(s)	45, 267
BccI	CCATC	2 cut(s)	48, 181
BceAI	ACGGC	1 cut(s)	109
BclI	TGATCA	1 cut(s)	184
BfuAI	ACCTGC	2 cut(s)	166, 321
BisI	GCNGC	2 cut(s)	34, 256
BlsI	GCNGC	2 cut(s)	35, 257
BmcAI	AGTACT	1 cut(s)	89
BpmI	CTGGAG	2 cut(s)	121, 300
Bsa29I	ATCGAT	1 cut(s)	58
BseCI	ATCGAT	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	45, 267
BsgI	GTGCAG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	96
BshVI	ATCGAT	1 cut(s)	58
BsiEI	CGRYCG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	55, 59, 184, 214
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	60
BspDI	ATCGAT	1 cut(s)	58
BspMI	ACCTGC	2 cut(s)	166, 321
BspPI	GGATC	2 cut(s)	63, 209
BssMI	GATC	4 cut(s)	55, 59, 184, 214
Bst4CI	ACNGT	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	47
BstKTI	GATC	4 cut(s)	58, 62, 187, 217
BstMBI	GATC	4 cut(s)	55, 59, 184, 214
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	45, 267
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	96
BsuTUI	ATCGAT	1 cut(s)	58
BveI	ACCTGC	2 cut(s)	166, 321
Cac8I	GCNNGC	1 cut(s)	135
ClaI	ATCGAT	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	134, 208
CviJI	RGCY	7 cut(s)	36, 46, 96, 125, 258, 278, 291
CviKI_1	RGCY	7 cut(s)	36, 46, 96, 125, 258, 278, 291
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	57, 61, 186, 216
DpnII	GATC	4 cut(s)	55, 59, 184, 214
FaeI	CATG	2 cut(s)	137, 211
FaiI	YATR	6 cut(s)	53, 135, 170, 209, 234, 251
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	2 cut(s)	133, 207
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	34, 256
Fsp4HI	GCNGC	2 cut(s)	34, 256
GluI	GCNGC	2 cut(s)	34, 256
GsuI	CTGGAG	2 cut(s)	121, 300
HaeIII	GGCC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	137, 211
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	2 cut(s)	11, 247
Hpy188III	TCNNGA	4 cut(s)	74, 100, 179, 188
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	133, 137, 155, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	137, 211
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	55, 59, 184, 214
LmnI	GCTCC	2 cut(s)	102, 263
LpnPI	CCDG	5 cut(s)	85, 171, 173, 264, 316
Lsp1109I	GCAGC	2 cut(s)	45, 267
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	4 cut(s)	57, 61, 186, 216
MboI	GATC	4 cut(s)	55, 59, 184, 214
MboII	GAAGA	1 cut(s)	102
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	2 cut(s)	106, 310
MnlI	CCTC	5 cut(s)	107, 186, 190, 271, 275
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	4 cut(s)	55, 59, 184, 214
NlaIII	CATG	2 cut(s)	137, 211
NmuCI	GTSAC	1 cut(s)	333
NspI	RCATGY	1 cut(s)	137
PaeI	GCATGC	1 cut(s)	137
PaqCI	CACCTGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	35, 257
Ple19I	CGATCG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	214
PvuI	CGATCG	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	2 cut(s)	34, 256
Sau3AI	GATC	4 cut(s)	55, 59, 184, 214
ScaI	AGTACT	1 cut(s)	89
SetI	ASST	8 cut(s)	25, 38, 48, 127, 160, 260, 280, 335
SmiMI	CAYNNNNRTG	1 cut(s)	206
SphI	GCATGC	1 cut(s)	137
Sse9I	AATT	2 cut(s)	106, 310
SspI	AATATT	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	58, 62, 180
TasI	AATT	2 cut(s)	106, 310
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	2 cut(s)	33, 255
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	137
ZrmI	AGTACT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.