pycom06g02200

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
2647396 .. 2647797
402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGTCGTTCTCTCGGTCTCGCCCTCTCGCATCGTTCTGCAAATTCACTCCAGTTGCCATCGTCAATCCCCATGTTCTTCCTCCTCCTTCTCCTTCTTCTTCTCCCTCTCTCCTCACACCCACTCACCAAATCGCTCAGTCGCCAAGCCACAAGCTTCTTCTGAAGCAATGGCTGAAAGAAGAACAGCTAATTCTCAACTGGGTCTCTGTCAAAGAATCCAAATCGACTCGATTTGAAAGGAATTCGCGATGCTCTTCATCTTCTTCTTCCTCTTGCACTCCACGGCTGTCGCCCTTCTCTTCAGTTCCTCGTCGCAGGACCTGCACGGGTTCGCGTGCTATTAAGTATAAAACCAACACGGAGGGGCTCCTAGAGAAGTTGTTGGAGAAAGAACGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.88

Weight (kDa)

10.4

Isoelectric Point (pI)

87.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 329
AccII CGCG 2 cut(s) 247, 334
AcsI RAATTY 2 cut(s) 41, 241
AcuI CTGAAG 2 cut(s) 182, 285
AgsI TTSAA 1 cut(s) 236
AluBI AGCT 2 cut(s) 154, 187
AluI AGCT 2 cut(s) 154, 187
Alw26I GTCTC 2 cut(s) 21, 208
AlwNI CAGNNNCTG 1 cut(s) 321
ApoI RAATTY 2 cut(s) 41, 241
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 369
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 21, 208
BfaI CTAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 329
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 368
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 2 cut(s) 38, 239
BmuI ACTGGG 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 33
BsaI GGTCTC 2 cut(s) 21, 208
BsaJI CCNNGG 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 50, 203
Bse3DI GCAATG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 50, 203
BseRI GAGGAG 2 cut(s) 72, 101
BsgI GTGCAG 1 cut(s) 307
Bsh1236I CGCG 2 cut(s) 247, 334
BsmAI GTCTC 2 cut(s) 21, 208
Bso31I GGTCTC 2 cut(s) 21, 208
Bsp1286I GDGCHC 1 cut(s) 369
Bsp68I TCGCGA 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 2 cut(s) 247, 334
BspLI GGNNCC 1 cut(s) 368
BspMI ACCTGC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 259
BspTNI GGTCTC 2 cut(s) 21, 208
BsrDI GCAATG 1 cut(s) 173
BsrI ACTGG 2 cut(s) 50, 203
BssECI CCNNGG 1 cut(s) 281
Bst6I CTCTTC 2 cut(s) 259, 304
BstAPI GCANNNNNTGC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 281
BstFNI CGCG 2 cut(s) 247, 334
BstMAI GTCTC 2 cut(s) 21, 208
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstUI CGCG 2 cut(s) 247, 334
BtgI CCRYGG 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 262
BtuMI TCGCGA 1 cut(s) 247
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 318
CviAII CATG 1 cut(s) 71
CviJI RGCY 6 cut(s) 147, 154, 172, 187, 286, 367
CviKI_1 RGCY 6 cut(s) 147, 154, 172, 187, 286, 367
DdeI CTNAG 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 259, 304
EarI CTCTTC 2 cut(s) 259, 304
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 2 cut(s) 21, 208
Eco47I GGWCC 1 cut(s) 318
Eco57I CTGAAG 2 cut(s) 182, 285
EcoO109I RGGNCCY 1 cut(s) 318
EcoRI GAATTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 1 cut(s) 74
FaiI YATR 2 cut(s) 72, 348
FatI CATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 369
FspBI CTAG 1 cut(s) 371
GsuI CTGGAG 1 cut(s) 33
Hin1II CATG 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 2 cut(s) 215, 226
HphI GGTGA 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 246
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 3 cut(s) 96, 102, 304
HpyCH4V TGCA 3 cut(s) 39, 276, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 1 cut(s) 74
LguI GCTCTTC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 4 cut(s) 63, 184, 301, 334
LweI GCATC 2 cut(s) 38, 239
MaeI CTAG 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 3 cut(s) 41, 189, 241
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 9 cut(s) 33, 90, 93, 115, 122, 280, 318, 355, 389
MseI TTAA 1 cut(s) 342
MvnI CGCG 2 cut(s) 247, 334
MwoI GCNNNNNNNGC 1 cut(s) 321
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 368
NruI TCGCGA 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 215
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 1 cut(s) 318
PspPPI RGGWCCY 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 321
RruI TCGCGA 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 220
SduI GDGCHC 1 cut(s) 369
SetI ASST 3 cut(s) 156, 189, 323
SfaNI GCATC 2 cut(s) 38, 239
SinI GGWCC 1 cut(s) 318
Sse9I AATT 3 cut(s) 41, 189, 241
SspMI CTAG 1 cut(s) 371
TaqI TCGA 2 cut(s) 224, 229
TasI AATT 3 cut(s) 41, 189, 241
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 2 cut(s) 41, 241
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.