pycom06g03230

ATP-dependent zinc metalloprotease FTSH 11

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
4035400 .. 4036640
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGCAATCTCGTATTGACGCTGAAGTGGTGAAACTGTTAAGAGAAGCATACGATCGTGTAAAAGCACTTCTGAAGAAGCATGAAGAGGCATTGCATACATTGGCAAATGCACTTTTAGAGTACGAAACCCTTGGTGCAGAAGAAATCAAGCGTATTCTTCTTCCGTATCAGGATGGCTTGCTACCCGAGCAACAAGAGGAGCAACAAGAGGGGGATCTTGTACTGGTTTAA

Protein Analysis

77

Amino Acids

8.76

Weight (kDa)

4.7

Isoelectric Point (pI)

61.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M41 PF01434 2 - 52 2.4e-11 Peptidase family M41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 222
AcuI CTGAAG 2 cut(s) 42, 92
AfaI GTAC 2 cut(s) 122, 222
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 185
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BccI CCATC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 185
Bsp143I GATC 2 cut(s) 52, 214
BspPI GGATC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 89
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 52, 214
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 179
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 2 cut(s) 55, 217
BstMBI GATC 2 cut(s) 52, 214
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 179
CseI GACGC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 121, 221
CviAII CATG 1 cut(s) 80
CviJI RGCY 1 cut(s) 177
CviKI_1 RGCY 1 cut(s) 177
CviQI GTAC 2 cut(s) 121, 221
DpnI GATC 2 cut(s) 54, 216
DpnII GATC 2 cut(s) 52, 214
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 130
Eco57I CTGAAG 2 cut(s) 42, 92
Eco88I CYCGRG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 83
FaiI YATR 3 cut(s) 49, 81, 96
FatI CATG 1 cut(s) 79
FokI GGATG 1 cut(s) 185
HgaI GACGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 83
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 4 cut(s) 4, 94, 110, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 2 cut(s) 52, 214
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 2 cut(s) 155, 209
MalI GATC 2 cut(s) 54, 216
MboI GATC 2 cut(s) 52, 214
MboII GAAGA 5 cut(s) 85, 95, 149, 152, 152
MflI RGATCY 1 cut(s) 214
MnlI CCTC 3 cut(s) 79, 190, 202
MseI TTAA 2 cut(s) 38, 229
MwoI GCNNNNNNNGC 1 cut(s) 187
NdeII GATC 2 cut(s) 52, 214
NlaIII CATG 1 cut(s) 83
Ple19I CGATCG 1 cut(s) 55
PsuI RGATCY 1 cut(s) 214
PvuI CGATCG 1 cut(s) 55
RsaI GTAC 2 cut(s) 122, 222
RsaNI GTAC 2 cut(s) 121, 221
SaqAI TTAA 2 cut(s) 38, 229
Sau3AI GATC 2 cut(s) 52, 214
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 36
TatI WGTACW 1 cut(s) 220
Tru1I TTAA 2 cut(s) 38, 229
Tru9I TTAA 2 cut(s) 38, 229
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.