pycom06g03460

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
4353478 .. 4354048
571 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 477 bp
ATGAAAGTGAAAAGTTCTTATGAAAAGCCTTACCCCACTGGCTACATAAAAGTTAAAACCGCAGCTTTTGAAAGTTTTGGGATTGCTGGTGCTACAAACCCTGAACAAACTCAGATATTCGAACATCATTTTTGGCCCAATGGAAATGATGTATTTCGTGAGACTGCTGATTTGTATACAAAAGTGATGGAAGAACTACAGCATGCTGTCACGAGAATGGTGTTTGAAAACTATGGTGTAGAGAAGTACCATGATGATCACCTTCAATCGACTGTTCACACGTGCCGATTTAACAAATACAGTGAGCCTGAGAAAACTGGAACTAATGTGGGTTTGCCAGGTCATACAGACACAAACTTTAGCACCATACTCTATCAAAATCATGTCAAAGGTCTGGAAATATATTCAAAGGACGATGAGTGGATATGTTTTAGAGCTGGATCCTCTGCCTTCGTCCTTCATATTTCTAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

159

Amino Acids

18.16

Weight (kDa)

6.12

Isoelectric Point (pI)

20.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 95 - 155 1.7e-07 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 462
Acc36I ACCTGC 1 cut(s) 462
AccI GTMKAC 1 cut(s) 176
AciI CCGC 1 cut(s) 60
AclWI GGATC 2 cut(s) 435, 448
AcvI CACGTG 1 cut(s) 282
AfaI GTAC 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 4 cut(s) 71, 227, 266, 408
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 2 cut(s) 65, 437
AluI AGCT 2 cut(s) 65, 437
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 2 cut(s) 435, 448
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 120
BamHI GGATCC 1 cut(s) 440
BauI CACGAG 1 cut(s) 211
BbrPI CACGTG 1 cut(s) 282
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 339
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 468
BfmI CTRYAG 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 462
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 43, 322
BseBI CCWGG 1 cut(s) 339
BseMII CTCAG 2 cut(s) 125, 300
BseNI ACTGG 2 cut(s) 43, 322
BseXI GCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 120
Bsp143I GATC 2 cut(s) 256, 440
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 2 cut(s) 124, 301
BspLI GGNNCC 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 462
BspPI GGATC 2 cut(s) 435, 448
BspT104I TTCGAA 1 cut(s) 120
BsrI ACTGG 2 cut(s) 43, 322
BssMI GATC 2 cut(s) 256, 440
BssNAI GTATAC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 211
Bst1107I GTATAC 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 274, 302
BstBAI YACGTR 1 cut(s) 282
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 111, 309
BstKTI GATC 2 cut(s) 259, 443
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 256, 440
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BstZ17I GTATAC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 36, 307
BveI ACCTGC 1 cut(s) 462
Cac8I GCNNGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 247
CviAII CATG 3 cut(s) 203, 251, 383
CviJI RGCY 6 cut(s) 28, 42, 65, 136, 307, 437
CviKI_1 RGCY 6 cut(s) 28, 42, 65, 136, 307, 437
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 111, 309
DpnI GATC 2 cut(s) 258, 442
DpnII GATC 2 cut(s) 256, 440
Eco72I CACGTG 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 337
FaeI CATG 3 cut(s) 206, 254, 386
FatI CATG 3 cut(s) 202, 250, 382
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 468
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 136
Hin1II CATG 3 cut(s) 206, 254, 386
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 177, 277
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 158, 211, 395
Hpy8I GTNNAC 2 cut(s) 177, 277
HpyAV CCTTC 3 cut(s) 272, 460, 467
HpyCH4III ACNGT 2 cut(s) 274, 302
HpyCH4IV ACGT 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 111, 309
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 3 cut(s) 206, 254, 386
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 2 cut(s) 256, 440
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 1 cut(s) 468
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 258, 442
MboI GATC 2 cut(s) 256, 440
MboII GAAGA 1 cut(s) 203
MflI RGATCY 1 cut(s) 440
MnlI CCTC 1 cut(s) 454
MseI TTAA 2 cut(s) 54, 291
MslI CAYNNNNRTG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
NdeII GATC 2 cut(s) 256, 440
NlaIII CATG 3 cut(s) 206, 254, 386
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 1 cut(s) 206
NspV TTCGAA 1 cut(s) 120
PaeI GCATGC 1 cut(s) 206
PaqCI CACCTGC 1 cut(s) 462
PkrI GCNGC 1 cut(s) 64
PmaCI CACGTG 1 cut(s) 282
PmlI CACGTG 1 cut(s) 282
Ppu21I YACGTR 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 337
PspCI CACGTG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 2 cut(s) 54, 291
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 256, 440
Sau96I GGNCC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 339
SetI ASST 7 cut(s) 67, 264, 284, 343, 394, 439, 476
SfcI CTRYAG 1 cut(s) 197
SfuI TTCGAA 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 215
SphI GCATGC 1 cut(s) 206
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 274, 302
TaiI ACGT 1 cut(s) 284
TaqI TCGA 2 cut(s) 120, 269
Tru1I TTAA 2 cut(s) 54, 291
Tru9I TTAA 2 cut(s) 54, 291
TscAI CASTG 2 cut(s) 43, 307
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 17, 36, 449
TspRI CASTG 2 cut(s) 43, 307
XceI RCATGY 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 176
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.