pycom06g03740

lipid metabolic process

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
4694324 .. 4694655
332 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGCTTTTTGGTGCATCACCTATTATTTCAGATGTTGCTCCTATTACCAGTGTTCCAAATTCTAGTTCACATGCTGCTTCTGTTGATACAACTGTTTCTTCACCTGATGCTCTTAATATCTCTTTTACTGCACTAAATACTCACCCTATGACCACACGATCTAAAGCAAGGATCTTCAAGCCAAAGGCTTTTTCAGCAACCAAGCATCCTATTCCCTCTTCTGTAGATTATGTTACATTCACTTATTTGCAAGCTTTCATGCATGCTCATTGGAGAACTGCCATGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

97

Amino Acids

10.41

Weight (kDa)

9.7

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 58
AgsI TTSAA 1 cut(s) 178
AjuI GAANNNNNNNTTGG 4 cut(s) 49, 81, 175, 207
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
AlwI GGATC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 58
AsuHPI GGTGA 3 cut(s) 9, 93, 134
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BbvI GCAGC 1 cut(s) 61
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmsI GCATC 3 cut(s) 23, 97, 214
Bse1I ACTGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 114
Bsp143I GATC 2 cut(s) 158, 171
BspPI GGATC 1 cut(s) 179
BsrI ACTGG 1 cut(s) 48
BssMI GATC 2 cut(s) 158, 171
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 252, 264
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 2 cut(s) 161, 174
BstMBI GATC 2 cut(s) 158, 171
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 2 cut(s) 74, 266
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 252, 264
CviAII CATG 4 cut(s) 71, 259, 263, 283
CviJI RGCY 3 cut(s) 181, 188, 254
CviKI_1 RGCY 3 cut(s) 181, 188, 254
DpnI GATC 2 cut(s) 160, 173
DpnII GATC 2 cut(s) 158, 171
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 264
FaeI CATG 4 cut(s) 74, 262, 266, 286
FaiI YATR 6 cut(s) 72, 149, 231, 260, 264, 284
FatI CATG 4 cut(s) 70, 258, 262, 282
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 75
Hin1II CATG 4 cut(s) 74, 262, 266, 286
HindIII AAGCTT 1 cut(s) 252
HphI GGTGA 3 cut(s) 9, 93, 134
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 14, 131, 250, 262, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
Hsp92II CATG 4 cut(s) 74, 262, 266, 286
Kzo9I GATC 2 cut(s) 158, 171
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 61, 117
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 3 cut(s) 23, 97, 214
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 160, 173
MboI GATC 2 cut(s) 158, 171
MboII GAAGA 3 cut(s) 90, 166, 210
MflI RGATCY 1 cut(s) 171
MluCI AATT 1 cut(s) 58
MnlI CCTC 1 cut(s) 226
Mph1103I ATGCAT 1 cut(s) 264
MseI TTAA 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 2 cut(s) 158, 171
NlaIII CATG 4 cut(s) 74, 262, 266, 286
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 2 cut(s) 74, 266
PaeI GCATGC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 171
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 158, 171
SetI ASST 3 cut(s) 22, 106, 256
SfaNI GCATC 3 cut(s) 23, 97, 214
SfcI CTRYAG 1 cut(s) 222
SphI GCATGC 1 cut(s) 266
Sse9I AATT 1 cut(s) 58
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 94
TasI AATT 1 cut(s) 58
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 247
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 58
XceI RCATGY 2 cut(s) 74, 266
XspI CTAG 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.