Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4785499 .. 4786688

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGCTAGAATATGAAATTTTGGGTCATTTGACTGATAAAGCAAATGTTTACAGCTTTGGAATTATTCTACTAGAGGTTAGTAGTGAGAAGAAGAACTCAACTCAAAATGCAAAAAGATTTTATACTCTTTATTGGGCACATGTTCTCAAATCGGAAAGGAAATTGATGAACCTAGTGGATCCAAGGTTGGGCTCAAAATTCAACAATGAAGAGATGATGGCTACAATCAATGTGGATTTCCATTACTGTAATTCCACTGCAAAGCTTAGGCCTACCATGTTTGCAGTTGTTAAACACTGGATCTTACAACTACTAACTTATGATTGTAAACTTGCTAAATTCAAGTTGAGTTGTATATTATATTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

125

Amino Acids

14.56

Weight (kDa)

9.13

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	176, 189, 311
AcsI	RAATTY	3 cut(s)	18, 200, 341
AfiI	CCNNNNNNNGG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	205, 346
AluBI	AGCT	2 cut(s)	57, 268
AluI	AGCT	2 cut(s)	57, 268
AlwI	GGATC	3 cut(s)	176, 189, 311
AoxI	GGCC	1 cut(s)	272
ApoI	RAATTY	3 cut(s)	18, 200, 341
AspLEI	GCGC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	197
BccI	CCATC	1 cut(s)	214
BfaI	CTAG	3 cut(s)	8, 74, 176
BfoI	RGCGCY	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	142
BshFI	GGCC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	191
BsnI	GGCC	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	142, 197
Bsp143I	GATC	2 cut(s)	181, 303
BspANI	GGCC	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	3 cut(s)	176, 189, 311
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	181, 303
BssT1I	CCWWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	184, 306
BstMBI	GATC	2 cut(s)	181, 303
BstNSI	RCATGY	1 cut(s)	146
BstSLI	GKGCMC	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	181, 303
BstYI	RGATCY	2 cut(s)	181, 303
BsuRI	GGCC	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	258, 298
CfoI	GCGC	1 cut(s)	7
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	2 cut(s)	143, 280
CviJI	RGCY	5 cut(s)	57, 195, 224, 268, 274
CviKI_1	RGCY	5 cut(s)	57, 195, 224, 268, 274
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	183, 305
DpnII	GATC	2 cut(s)	181, 303
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	146, 283
FaiI	YATR	7 cut(s)	15, 126, 144, 281, 324, 359, 364
FatI	CATG	2 cut(s)	142, 279
FriOI	GRGCYC	1 cut(s)	197
FspBI	CTAG	3 cut(s)	8, 74, 176
GlaI	GCGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	146, 283
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	52, 332
Hpy188I	TCNGA	1 cut(s)	157
Hpy8I	GTNNAC	2 cut(s)	52, 332
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	3 cut(s)	113, 263, 287
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	146, 283
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	181, 303
LpnPI	CCDG	1 cut(s)	286
MaeI	CTAG	3 cut(s)	8, 74, 176
MalI	GATC	2 cut(s)	183, 305
MboI	GATC	2 cut(s)	181, 303
MboII	GAAGA	3 cut(s)	103, 106, 224
MflI	RGATCY	2 cut(s)	181, 303
MhlI	GDGCHC	2 cut(s)	142, 197
MluCI	AATT	7 cut(s)	18, 63, 164, 200, 253, 341, 370
MnlI	CCTC	1 cut(s)	70
MseI	TTAA	1 cut(s)	294
NdeII	GATC	2 cut(s)	181, 303
NlaIII	CATG	2 cut(s)	146, 283
NlaIV	GGNNCC	1 cut(s)	183
NspI	RCATGY	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	274
PciI	ACATGT	1 cut(s)	142
PscI	ACATGT	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	183
PsuI	RGATCY	2 cut(s)	181, 303
SaqAI	TTAA	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	181, 303
SduI	GDGCHC	2 cut(s)	142, 197
SetI	ASST	5 cut(s)	59, 81, 177, 191, 270
SgeI	CNNG	9 cut(s)	20, 86, 155, 188, 198, 292, 313, 347, 358
Sse9I	AATT	7 cut(s)	18, 63, 164, 200, 253, 341, 370
SseBI	AGGCCT	1 cut(s)	274
SspMI	CTAG	3 cut(s)	8, 74, 176
StuI	AGGCCT	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	251
TasI	AATT	7 cut(s)	18, 63, 164, 200, 253, 341, 370
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	265, 305
TspDTI	ATGAA	3 cut(s)	30, 185, 225
TspRI	CASTG	2 cut(s)	265, 305
XapI	RAATTY	3 cut(s)	18, 200, 341
XceI	RCATGY	1 cut(s)	146
XspI	CTAG	3 cut(s)	8, 74, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.