pycom06g04380

deSI-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
5629840 .. 5630025
186 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGTGTGATGTCGTTTGCATAAATTATTTTCCCTTCCTTACTGTCTCTGCAGACGAGGATGACGACTACGGATCAGAATCTATTGCATCATCTGGAACAGGAGCAAGTGAGGAGGGGCAAAATCATCATCTCCTGACTGTACCAAGTGGTGATGTAGCTTTCGTGAAGGAAAAACCTCCGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

6.48

Weight (kDa)

4.05

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 79
AfaI GTAC 1 cut(s) 141
AjiI CACGTC 1 cut(s) 183
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 183
BmsI GCATC 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 76
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 79
BssMI GATC 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 43, 139
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 48
BtrI CACGTC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 64
Csp6I GTAC 1 cut(s) 140
CviJI RGCY 1 cut(s) 158
CviKI_1 RGCY 1 cut(s) 158
CviQI GTAC 1 cut(s) 140
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
FaiI YATR 1 cut(s) 20
FokI GGATG 1 cut(s) 71
HinfI GANTC 1 cut(s) 77
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 2 cut(s) 76, 180
Hpy188III TCNNGA 3 cut(s) 93, 133, 163
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 43, 160
HpyCH4III ACNGT 2 cut(s) 43, 139
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 3 cut(s) 18, 50, 86
HpySE526I ACGT 1 cut(s) 182
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 3 cut(s) 78, 84, 146
LweI GCATC 1 cut(s) 95
MaeII ACGT 1 cut(s) 182
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MluCI AATT 1 cut(s) 22
MnlI CCTC 4 cut(s) 49, 103, 106, 186
NdeII GATC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 1 cut(s) 77
PstI CTGCAG 1 cut(s) 52
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 71
SetI ASST 3 cut(s) 160, 178, 185
SfaNI GCATC 1 cut(s) 95
SfcI CTRYAG 1 cut(s) 48
SgeI CNNG 7 cut(s) 67, 105, 111, 117, 145, 156, 175
Sse9I AATT 1 cut(s) 22
TaaI ACNGT 2 cut(s) 43, 139
TaiI ACGT 1 cut(s) 185
TasI AATT 1 cut(s) 22
TfiI GAWTC 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.