pycom06g04810

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
6426031 .. 6426530
500 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
ATGCTATTATTAAATTACTACGTCCAGTCTAACATCCAAATAAATGAGTACATAGATCGTGTTGTATTGCCTTCCGTAACGAAGAAGTATGGACAATATATTGGAACGTGTGTGAAGCTTTTGACTGTTATCTCTACAATTGATGACTTAAACTGTCCAGAGAACACAGATACATACTATATTGTCAATGTCCCATACATATTTTCCACCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.19

Weight (kDa)

4.53

Isoelectric Point (pI)

25.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 107
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 25
BssMI GATC 1 cut(s) 55
Bst4CI ACNGT 2 cut(s) 127, 155
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 33
Csp6I GTAC 1 cut(s) 49
CviJI RGCY 1 cut(s) 118
CviKI_1 RGCY 1 cut(s) 118
CviQI GTAC 1 cut(s) 49
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
FaiI YATR 7 cut(s) 53, 90, 99, 175, 180, 196, 200
FaqI GGGAC 1 cut(s) 176
FokI GGATG 1 cut(s) 20
FspEI CC 9 cut(s) 38, 50, 75, 84, 87, 88, 171, 206, 207
HindIII AAGCTT 1 cut(s) 116
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 2 cut(s) 127, 155
HpyCH4IV ACGT 2 cut(s) 21, 107
HpySE526I ACGT 2 cut(s) 21, 107
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 2 cut(s) 38, 171
MaeII ACGT 2 cut(s) 21, 107
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 94
MfeI CAATTG 1 cut(s) 138
MluCI AATT 2 cut(s) 13, 138
MseI TTAA 2 cut(s) 11, 149
MunI CAATTG 1 cut(s) 138
NdeII GATC 1 cut(s) 55
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 11, 149
Sau3AI GATC 1 cut(s) 55
SetI ASST 4 cut(s) 24, 110, 120, 212
SgeI CNNG 4 cut(s) 37, 71, 120, 170
Sse9I AATT 2 cut(s) 13, 138
TaaI ACNGT 2 cut(s) 127, 155
TaiI ACGT 2 cut(s) 24, 110
TasI AATT 2 cut(s) 13, 138
TatI WGTACW 1 cut(s) 48
Tru1I TTAA 2 cut(s) 11, 149
Tru9I TTAA 2 cut(s) 11, 149
TspGWI ACGGA 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.