pycom06g05680

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
8523769 .. 8524392
624 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGTTCCTTTCACCACTGGTGGTACTATTACTCGTGTACCAAACAATCGATCCACCTGTGAGTGTGCCATTTATATCTCAGGGTTCTACTGCAATGCATGCTCCGCCACCAGGTCCTATTTTTCCGCATATTCCTTATTCTATTGATGGTTCTATGTTTCCTCAAGTTCCATATTCTCCTACTTCATACATGCTGCCTCCATCTTTGCCTCCTATATATCCTGATTTTACCAATGTCTATGGTTTTATTGGCAATGGTAATCCTCCTAGGCCATTTCCTAATTCCAATAATGGTTCGCAGTCTTTCTCTGGTTCTAAGCCTAATGGGGGCTATAGAGGTTCAAATTTTGGAAATGGAAGAGGACAATTTTCTGGTCCTAAACAAAGTGGAGGTACTTGGCAGTCTTGGTCAGGGAATACTGAAACCAGATCTCATGTTGTCCCAGAGTGTCAAATCTTAAACGTGGTCACACAGCTCCTAATTGTTGGAAGCGATCTACTAGTCCTAGTTCTATGGGACAAGTTGTGGAATGTCAAATATGTGGCAAGCGTGGTCATAGTGCTTTGGATTGTCATCATCGCAATAACTTTGCCTATCAAGGCACATCTCCTGCTCATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

208

Amino Acids

22.47

Weight (kDa)

8.74

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 104, 125
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 343
AfaI GTAC 3 cut(s) 24, 38, 394
AfiI CCNNNNNNNGG 2 cut(s) 110, 326
AgsI TTSAA 1 cut(s) 342
AhlI ACTAGT 1 cut(s) 499
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 1 cut(s) 475
AluI AGCT 1 cut(s) 475
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 343
AspA2I CCTAGG 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 113, 374
AsuHPI GGTGA 1 cut(s) 3
AvaII GGWCC 2 cut(s) 113, 374
AvrII CCTAGG 1 cut(s) 266
BaeI ACNNNNGTAYC 2 cut(s) 20, 53
BauI CACGAG 1 cut(s) 32
BbvI GCAGC 1 cut(s) 180
BccI CCATC 2 cut(s) 140, 208
BciT130I CCWGG 1 cut(s) 111
BcuI ACTAGT 1 cut(s) 499
BfaI CTAG 3 cut(s) 267, 500, 506
BfmI CTRYAG 1 cut(s) 331
BglII AGATCT 1 cut(s) 428
BisI GCNGC 1 cut(s) 194
BlnI CCTAGG 1 cut(s) 266
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 2 cut(s) 113, 374
BmgT120I GGNCC 2 cut(s) 113, 374
BmrFI CCNGG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 266
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 326
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 2 cut(s) 99, 259
Bse8I GATNNNNATC 1 cut(s) 572
BseBI CCWGG 1 cut(s) 111
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 266
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 2 cut(s) 110, 326
BseMI GCAATG 2 cut(s) 99, 259
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 180
BshFI GGCC 1 cut(s) 271
BshVI ATCGAT 1 cut(s) 48
BslFI GGGAC 2 cut(s) 425, 530
BslI CCNNNNNNNGG 2 cut(s) 110, 326
BsmFI GGGAC 2 cut(s) 425, 530
BsnI GGCC 1 cut(s) 271
Bsp143I GATC 3 cut(s) 49, 428, 493
BspACI CCGC 2 cut(s) 104, 125
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 91
BspDI ATCGAT 1 cut(s) 48
BspPI GGATC 1 cut(s) 44
BsrDI GCAATG 2 cut(s) 99, 259
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 3 cut(s) 49, 428, 493
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 352
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 99, 547
BstDEI CTNAG 2 cut(s) 78, 315
BstKTI GATC 3 cut(s) 52, 431, 496
BstMBI GATC 3 cut(s) 49, 428, 493
BstMWI GCNNNNNNNGC 2 cut(s) 98, 103
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 2 cut(s) 101, 193
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
Bsu15I ATCGAT 1 cut(s) 48
BsuRI GGCC 1 cut(s) 271
BsuTUI ATCGAT 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 99, 547
Cfr13I GGNCC 2 cut(s) 113, 374
ClaI ATCGAT 1 cut(s) 48
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 3 cut(s) 23, 37, 393
CviAII CATG 3 cut(s) 98, 190, 434
CviJI RGCY 4 cut(s) 271, 319, 330, 475
CviKI_1 RGCY 4 cut(s) 271, 319, 330, 475
CviQI GTAC 3 cut(s) 23, 37, 393
DdeI CTNAG 2 cut(s) 78, 315
DpnI GATC 3 cut(s) 51, 430, 495
DpnII GATC 3 cut(s) 49, 428, 493
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
EciI GGCGGA 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 266
Eco47I GGWCC 2 cut(s) 113, 374
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 3 cut(s) 101, 193, 437
FaqI GGGAC 2 cut(s) 425, 530
FatI CATG 3 cut(s) 97, 189, 433
Fnu4HI GCNGC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 3 cut(s) 267, 500, 506
GluI GCNGC 1 cut(s) 194
HaeIII GGCC 1 cut(s) 271
Hin1II CATG 3 cut(s) 101, 193, 437
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 2 cut(s) 92, 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 103
HpyF3I CTNAG 2 cut(s) 78, 315
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 3 cut(s) 101, 193, 437
Kzo9I GATC 3 cut(s) 49, 428, 493
LmnI GCTCC 2 cut(s) 106, 480
Lsp1109I GCAGC 1 cut(s) 180
MabI ACCWGGT 1 cut(s) 109
MaeI CTAG 3 cut(s) 267, 500, 506
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 466
MalI GATC 3 cut(s) 51, 430, 495
MboI GATC 3 cut(s) 49, 428, 493
MboII GAAGA 1 cut(s) 369
MflI RGATCY 1 cut(s) 428
MluCI AATT 4 cut(s) 280, 343, 365, 480
MmeI TCCRAC 1 cut(s) 466
MnlI CCTC 7 cut(s) 171, 207, 219, 273, 329, 353, 383
Mph1103I ATGCAT 1 cut(s) 99
MseI TTAA 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 98, 103
NdeII GATC 3 cut(s) 49, 428, 493
NlaIII CATG 3 cut(s) 101, 193, 437
NmuCI GTSAC 1 cut(s) 466
NsiI ATGCAT 1 cut(s) 99
NspI RCATGY 2 cut(s) 101, 193
PaeI GCATGC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 195
PpuMI RGGWCCY 1 cut(s) 113
Psp5II RGGWCCY 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspPI GGNCC 2 cut(s) 113, 374
PspPPI RGGWCCY 1 cut(s) 113
PsuI RGATCY 1 cut(s) 428
RsaI GTAC 3 cut(s) 24, 38, 394
RsaNI GTAC 3 cut(s) 23, 37, 393
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 3 cut(s) 49, 428, 493
Sau96I GGNCC 2 cut(s) 113, 374
ScrFI CCNGG 1 cut(s) 111
SetI ASST 6 cut(s) 58, 115, 340, 394, 465, 477
SexAI ACCWGGT 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 331
SinI GGWCC 2 cut(s) 113, 374
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 499
SphI GCATGC 1 cut(s) 101
Sse9I AATT 4 cut(s) 280, 343, 365, 480
SsiI CCGC 2 cut(s) 104, 125
SspMI CTAG 3 cut(s) 267, 500, 506
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 1 cut(s) 266
TaiI ACGT 1 cut(s) 465
TaqI TCGA 1 cut(s) 48
TasI AATT 4 cut(s) 280, 343, 365, 480
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 113, 374
XapI RAATTY 1 cut(s) 343
XceI RCATGY 2 cut(s) 101, 193
XmaJI CCTAGG 1 cut(s) 266
XspI CTAG 3 cut(s) 267, 500, 506
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.